Gene name: CFD1
Reference locus (S288C): YIL003W
Gene biotype: protein_coding
Description: Cytosolic Fe-S cluster assembly factor CFD1; Highly conserved iron-sulfur cluster binding protein; localized in the cytoplasm; forms a complex with Nbp35p that is involved in iron-sulfur protein assembly in the cytosol
Top 10 interactors (score): NAR1 (0.999); DRE2 (0.997); MET18 (0.997); TAH18 (0.995); CIA2 (0.992); NBP35 (0.992); ATM1 (0.989); CIA1 (0.976); POL3 (0.95); RAD3 (0.943); YAE1 (0.913); NFS1 (0.91); RLI1 (0.908); DNA2 (0.9); LTO1 (0.896); IBA57 (0.892); ISD11 (0.89); JAC1 (0.872); ISA1 (0.865); ISU1 (0.829)
Homologues (species, bitscore): NUBP2 (Homo sapiens, 296.2); Nubp2 (Mus musculus, 292.7); nubp2 (Danio rerio, 294.7); nubp2 (Xenopus tropicalis, 291.6); CG4858 (Drosophila melanogaster, 288.1); F10G8.6 (Caenorhabditis elegans, 247.7); NBP35 (Arabidopsis thaliana, 238.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:348451-349332:+ | gene-YIL003W_AKU4011 | rna-NM_001179353.1_AKU4011 | cds-NP_012263.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000072.1:77208-78089:- | gene-YIL003W_BG1 | rna-NM_001179353.1_BG1 | cds-NP_012263.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:352976-353857:+ | gene-YIL003W_Bruggeman | rna-NM_001179353.1_Bruggeman | cds-NP_012263.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:339619-340500:+ | gene-YIL003W_CAT1 | rna-NM_001179353.1_CAT1 | cds-NP_012263.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:348524-349405:+ | gene-YIL003W_CBS1585 | rna-NM_001179353.1_CBS1585 | cds-NP_012263.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:341252-342133:+ | gene-YIL003W_CBS436 | rna-NM_001179353.1_CBS436 | cds-NP_012263.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:343930-344811:+ | gene-YIL003W_CBS6412 | rna-NM_001179353.1_CBS6412 | cds-NP_012263.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:340611-341492:+ | gene-YIL003W_CBS6413 | rna-NM_001179353.1_CBS6413 | cds-NP_012263.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:341183-342064:+ | gene-YIL003W_CENPK1137D | rna-NM_001179353.1_CENPK1137D | cds-NP_012263.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:331564-332445:+ | gene-YIL003W_EthanolRed | rna-NM_001179353.1_EthanolRed | cds-NP_012263.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:349810-350691:+ | gene-YIL003W_FaliES1 | rna-NM_001179353.1_FaliES1 | cds-NP_012263.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000009.1:40790-41671:- | gene-YIL003W_JAY291 | rna-NM_001179353.1_JAY291 | cds-NP_012263.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:350148-351029:+ | gene-YIL003W_MUCL30387 | rna-NM_001179353.1_MUCL30387 | cds-NP_012263.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:346896-347777:+ | gene-YIL003W_MUCL30388 | rna-NM_001179353.1_MUCL30388 | cds-NP_012263.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:349140-350021:+ | gene-YIL003W_MUCL39482 | rna-NM_001179353.1_MUCL39482 | cds-NP_012263.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:352778-353659:+ | gene-YIL003W_MUCL42920 | rna-NM_001179353.1_MUCL42920 | cds-NP_012263.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:349122-350003:+ | gene-YIL003W_NCIM3186 | rna-NM_001179353.1_NCIM3186 | cds-NP_012263.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:353408-354289:+ | gene-YIL003W_NCYC1407 | rna-NM_001179353.1_NCYC1407 | cds-NP_012263.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:343197-344078:+ | gene-YIL003W_PE2H3 | rna-NM_001179353.1_PE2H3 | cds-NP_012263.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:337903-338784:+ | gene-YIL003W_PE2H4 | rna-NM_001179353.1_PE2H4 | cds-NP_012263.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:349122-350003:+ | gene-YIL003W_S288C | rna-NM_001179353.1_S288C | cds-NP_012263.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000066.1:23949-24830:+ | gene-YIL003W_SA1 | rna-NM_001179353.1_SA1 | cds-NP_012263.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:347915-348796:+ | gene-YIL003W_ThermosaccDry | rna-NM_001179353.1_ThermosaccDry | cds-NP_012263.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:343758-344639:+ | gene-YIL003W_VR1 | rna-NM_001179353.1_VR1 | cds-NP_012263.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:321918-322799:+ | gene-YIL003W_ZTW1 | rna-NM_001179353.1_ZTW1 | cds-NP_012263.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:343263-344147:+ | gene-YIL003W_Sparadoxus | rna-NM_001179353.1_Sparadoxus | cds-NP_012263.1_Sparadoxus | 89.9 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |