Gene name: CEP3
Reference locus (S288C): YMR168C
Gene biotype: protein_coding
Description: Essential kinetochore protein; component of the CBF3 complex that binds the CDEIII region of the centromere; contains an N-terminal Zn2Cys6 type zinc finger domain, a C-terminal acidic domain, and a putative coiled coil dimerization domain
Top 10 interactors (score): CBF2 (0.999); CTF13 (0.999); SKP1 (0.999); CBF1 (0.97); DSN1 (0.924); CSE4 (0.92); OGG1 (0.9); CTF19 (0.862); BIR1 (0.853); CHL4 (0.827); SPC24 (0.819); OKP1 (0.818); SPC25 (0.817); SLI15 (0.794); AME1 (0.792); MTW1 (0.78); MIF2 (0.772); MCM21 (0.75); CTF3 (0.73); SGT1 (0.716)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:637081-638907:- | gene-YMR168C_AKU4011 | rna-NM_001182672.1_AKU4011 | cds-NP_013891.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:33922-35748:+ | gene-YMR168C_BG1 | rna-NM_001182672.1_BG1 | cds-NP_013891.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:580009-581835:- | gene-YMR168C_Bruggeman | rna-NM_001182672.1_Bruggeman | cds-NP_013891.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:583011-584837:- | gene-YMR168C_CAT1 | rna-NM_001182672.1_CAT1 | cds-NP_013891.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:569762-571588:- | gene-YMR168C_CBS1585 | rna-NM_001182672.1_CBS1585 | cds-NP_013891.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:573627-575453:- | gene-YMR168C_CBS436 | rna-NM_001182672.1_CBS436 | cds-NP_013891.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:682379-684205:- | gene-YMR168C_CBS6412 | rna-NM_001182672.1_CBS6412 | cds-NP_013891.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:568312-570138:- | gene-YMR168C_CBS6413 | rna-NM_001182672.1_CBS6413 | cds-NP_013891.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:591811-593637:- | gene-YMR168C_CENPK1137D | rna-NM_001182672.1_CENPK1137D | cds-NP_013891.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:629937-631763:- | gene-YMR168C_EthanolRed | rna-NM_001182672.1_EthanolRed | cds-NP_013891.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:575091-576917:- | gene-YMR168C_FaliES1 | rna-NM_001182672.1_FaliES1 | cds-NP_013891.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000292.1:806-2632:+ | gene-YMR168C_JAY291 | rna-NM_001182672.1_JAY291 | cds-NP_013891.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:574983-576809:- | gene-YMR168C_MUCL30387 | rna-NM_001182672.1_MUCL30387 | cds-NP_013891.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:580636-582462:- | gene-YMR168C_MUCL30388 | rna-NM_001182672.1_MUCL30388 | cds-NP_013891.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:570448-572274:- | gene-YMR168C_MUCL39482 | rna-NM_001182672.1_MUCL39482 | cds-NP_013891.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:577276-579102:- | gene-YMR168C_MUCL42920 | rna-NM_001182672.1_MUCL42920 | cds-NP_013891.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:597286-599112:- | gene-YMR168C_NCIM3186 | rna-NM_001182672.1_NCIM3186 | cds-NP_013891.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:570150-571976:- | gene-YMR168C_NCYC1407 | rna-NM_001182672.1_NCYC1407 | cds-NP_013891.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:580492-582318:- | gene-YMR168C_PE2H3 | rna-NM_001182672.1_PE2H3 | cds-NP_013891.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:580954-582780:- | gene-YMR168C_PE2H4 | rna-NM_001182672.1_PE2H4 | cds-NP_013891.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:597332-599158:- | gene-YMR168C_S288C | rna-NM_001182672.1_S288C | cds-NP_013891.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:207101-208927:+ | gene-YMR168C_SA1 | rna-NM_001182672.1_SA1 | cds-NP_013891.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:570823-572649:- | gene-YMR168C_ThermosaccDry | rna-NM_001182672.1_ThermosaccDry | cds-NP_013891.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:582978-584804:- | gene-YMR168C_VR1 | rna-NM_001182672.1_VR1 | cds-NP_013891.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:545446-547272:- | gene-YMR168C_ZTW1 | rna-NM_001182672.1_ZTW1 | cds-NP_013891.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:589108-590934:- | gene-YMR168C_Sparadoxus | rna-NM_001182672.1_Sparadoxus | cds-NP_013891.1_Sparadoxus | 89.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |