Gene name: CEF1
Reference locus (S288C): YMR213W
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor CEF1; Essential splicing factor; associated with Prp19p and the spliceosome, contains an N-terminal c-Myb DNA binding motif necessary for cell viability but not for Prp19p association, evolutionarily conserved and homologous to S. pombe Cdc5p
Top 10 interactors (score): SMX3 (0.999); SNU114 (0.999); LEA1 (0.999); CWC24 (0.999); GTS1 (0.999); SYF2 (0.999); CWC15 (0.999); PRP19 (0.999); SMD3 (0.999); YJU2 (0.999); SMB1 (0.999); HSH155 (0.999); SMD2 (0.999); CWC25 (0.999); CWC23 (0.999); PRP40 (0.999); PRP9 (0.999); MUD2 (0.999); PRP39 (0.999); CDC40 (0.999)
Homologues (species, bitscore): CDC5L (Homo sapiens, 246.9); Cdc5l (Mus musculus, 248.1); cdc5l (Danio rerio, 250.4); cdc5l (Xenopus tropicalis, 242.3); Cdc5 (Drosophila melanogaster, 249.6); D1081.8 (Caenorhabditis elegans, 235.0); CDC5 (Arabidopsis thaliana, 236.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:733304-735076:+ | gene-YMR213W_AKU4011 | rna-NM_001182720.1_AKU4011 | cds-NP_013940.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:219531-221303:- | gene-YMR213W_BG1 | rna-NM_001182720.1_BG1 | cds-NP_013940.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:677517-679289:+ | gene-YMR213W_Bruggeman | rna-NM_001182720.1_Bruggeman | cds-NP_013940.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:680774-682546:+ | gene-YMR213W_CAT1 | rna-NM_001182720.1_CAT1 | cds-NP_013940.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:665566-667338:+ | gene-YMR213W_CBS1585 | rna-NM_001182720.1_CBS1585 | cds-NP_013940.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:669818-671590:+ | gene-YMR213W_CBS436 | rna-NM_001182720.1_CBS436 | cds-NP_013940.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:777123-778895:+ | gene-YMR213W_CBS6412 | rna-NM_001182720.1_CBS6412 | cds-NP_013940.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:664714-666486:+ | gene-YMR213W_CBS6413 | rna-NM_001182720.1_CBS6413 | cds-NP_013940.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:688102-689874:+ | gene-YMR213W_CENPK1137D | rna-NM_001182720.1_CENPK1137D | cds-NP_013940.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:725770-727542:+ | gene-YMR213W_EthanolRed | rna-NM_001182720.1_EthanolRed | cds-NP_013940.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:671422-673194:+ | gene-YMR213W_FaliES1 | rna-NM_001182720.1_FaliES1 | cds-NP_013940.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:112843-114615:- | gene-YMR213W_JAY291 | rna-NM_001182720.1_JAY291 | cds-NP_013940.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:671065-672837:+ | gene-YMR213W_MUCL30387 | rna-NM_001182720.1_MUCL30387 | cds-NP_013940.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:677844-679616:+ | gene-YMR213W_MUCL30388 | rna-NM_001182720.1_MUCL30388 | cds-NP_013940.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:666636-668408:+ | gene-YMR213W_MUCL39482 | rna-NM_001182720.1_MUCL39482 | cds-NP_013940.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:673959-675731:+ | gene-YMR213W_MUCL42920 | rna-NM_001182720.1_MUCL42920 | cds-NP_013940.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:693335-695107:+ | gene-YMR213W_NCIM3186 | rna-NM_001182720.1_NCIM3186 | cds-NP_013940.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:666288-668060:+ | gene-YMR213W_NCYC1407 | rna-NM_001182720.1_NCYC1407 | cds-NP_013940.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:676135-677907:+ | gene-YMR213W_PE2H3 | rna-NM_001182720.1_PE2H3 | cds-NP_013940.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:677150-678922:+ | gene-YMR213W_PE2H4 | rna-NM_001182720.1_PE2H4 | cds-NP_013940.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:693381-695153:+ | gene-YMR213W_S288C | rna-NM_001182720.1_S288C | cds-NP_013940.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:112954-114726:- | gene-YMR213W_SA1 | rna-NM_001182720.1_SA1 | cds-NP_013940.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:667593-669365:+ | gene-YMR213W_ThermosaccDry | rna-NM_001182720.1_ThermosaccDry | cds-NP_013940.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:680661-682433:+ | gene-YMR213W_VR1 | rna-NM_001182720.1_VR1 | cds-NP_013940.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:83297-85069:+ | gene-YMR213W_ZTW1 | rna-NM_001182720.1_ZTW1 | cds-NP_013940.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:685370-687139:+ | gene-YMR213W_Sparadoxus | rna-NM_001182720.1_Sparadoxus | cds-NP_013940.1_Sparadoxus | 87.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |