CEF1 (YMR213W)


Gene profile

Gene name: CEF1
Reference locus (S288C): YMR213W
Gene biotype: protein_coding

Description: Pre-mRNA-splicing factor CEF1; Essential splicing factor; associated with Prp19p and the spliceosome, contains an N-terminal c-Myb DNA binding motif necessary for cell viability but not for Prp19p association, evolutionarily conserved and homologous to S. pombe Cdc5p

Top 10 interactors (score): SMX3 (0.999); SNU114 (0.999); LEA1 (0.999); CWC24 (0.999); GTS1 (0.999); SYF2 (0.999); CWC15 (0.999); PRP19 (0.999); SMD3 (0.999); YJU2 (0.999); SMB1 (0.999); HSH155 (0.999); SMD2 (0.999); CWC25 (0.999); CWC23 (0.999); PRP40 (0.999); PRP9 (0.999); MUD2 (0.999); PRP39 (0.999); CDC40 (0.999)

Homologues (species, bitscore): CDC5L (Homo sapiens, 246.9); Cdc5l (Mus musculus, 248.1); cdc5l (Danio rerio, 250.4); cdc5l (Xenopus tropicalis, 242.3); Cdc5 (Drosophila melanogaster, 249.6); D1081.8 (Caenorhabditis elegans, 235.0); CDC5 (Arabidopsis thaliana, 236.9)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005307.1:733304-735076:+ gene-YMR213W_AKU4011 rna-NM_001182720.1_AKU4011 cds-NP_013940.1_AKU4011 99.4 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000069.1:219531-221303:- gene-YMR213W_BG1 rna-NM_001182720.1_BG1 cds-NP_013940.1_BG1 99.9 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005515.1:677517-679289:+ gene-YMR213W_Bruggeman rna-NM_001182720.1_Bruggeman cds-NP_013940.1_Bruggeman 99.9 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005531.1:680774-682546:+ gene-YMR213W_CAT1 rna-NM_001182720.1_CAT1 cds-NP_013940.1_CAT1 99.4 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005371.1:665566-667338:+ gene-YMR213W_CBS1585 rna-NM_001182720.1_CBS1585 cds-NP_013940.1_CBS1585 99.4 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005355.1:669818-671590:+ gene-YMR213W_CBS436 rna-NM_001182720.1_CBS436 cds-NP_013940.1_CBS436 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005339.1:777123-778895:+ gene-YMR213W_CBS6412 rna-NM_001182720.1_CBS6412 cds-NP_013940.1_CBS6412 99.3 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005323.1:664714-666486:+ gene-YMR213W_CBS6413 rna-NM_001182720.1_CBS6413 cds-NP_013940.1_CBS6413 99.3 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001534.1:688102-689874:+ gene-YMR213W_CENPK1137D rna-NM_001182720.1_CENPK1137D cds-NP_013940.1_CENPK1137D 99.3 100.0 Verified 1 1 1 False True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005486.1:725770-727542:+ gene-YMR213W_EthanolRed rna-NM_001182720.1_EthanolRed cds-NP_013940.1_EthanolRed 99.3 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005547.1:671422-673194:+ gene-YMR213W_FaliES1 rna-NM_001182720.1_FaliES1 cds-NP_013940.1_FaliES1 99.3 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000141.1:112843-114615:- gene-YMR213W_JAY291 rna-NM_001182720.1_JAY291 cds-NP_013940.1_JAY291 99.4 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005419.1:671065-672837:+ gene-YMR213W_MUCL30387 rna-NM_001182720.1_MUCL30387 cds-NP_013940.1_MUCL30387 99.8 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005451.1:677844-679616:+ gene-YMR213W_MUCL30388 rna-NM_001182720.1_MUCL30388 cds-NP_013940.1_MUCL30388 99.8 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005291.1:666636-668408:+ gene-YMR213W_MUCL39482 rna-NM_001182720.1_MUCL39482 cds-NP_013940.1_MUCL39482 99.4 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005435.1:673959-675731:+ gene-YMR213W_MUCL42920 rna-NM_001182720.1_MUCL42920 cds-NP_013940.1_MUCL42920 99.8 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011822.1:693335-695107:+ gene-YMR213W_NCIM3186 rna-NM_001182720.1_NCIM3186 cds-NP_013940.1_NCIM3186 99.3 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005275.1:666288-668060:+ gene-YMR213W_NCYC1407 rna-NM_001182720.1_NCYC1407 cds-NP_013940.1_NCYC1407 99.3 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994152.1:676135-677907:+ gene-YMR213W_PE2H3 rna-NM_001182720.1_PE2H3 cds-NP_013940.1_PE2H3 99.9 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999884.1:677150-678922:+ gene-YMR213W_PE2H4 rna-NM_001182720.1_PE2H4 cds-NP_013940.1_PE2H4 99.9 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001145.3:693381-695153:+ gene-YMR213W_S288C rna-NM_001182720.1_S288C cds-NP_013940.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000002.1:112954-114726:- gene-YMR213W_SA1 rna-NM_001182720.1_SA1 cds-NP_013940.1_SA1 99.9 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005499.1:667593-669365:+ gene-YMR213W_ThermosaccDry rna-NM_001182720.1_ThermosaccDry cds-NP_013940.1_ThermosaccDry 99.3 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005467.1:680661-682433:+ gene-YMR213W_VR1 rna-NM_001182720.1_VR1 cds-NP_013940.1_VR1 99.4 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000028.1:83297-85069:+ gene-YMR213W_ZTW1 rna-NM_001182720.1_ZTW1 cds-NP_013940.1_ZTW1 99.4 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047499.1:685370-687139:+ gene-YMR213W_Sparadoxus rna-NM_001182720.1_Sparadoxus cds-NP_013940.1_Sparadoxus 87.1 99.8 Verified 1 1 1 False True False False False

Additional files