Gene name: CDS1
Reference locus (S288C): YBR029C
Gene biotype: protein_coding
Description: Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase); an enzyme that catalyzes that conversion of CTP + phosphate into diphosphate + CDP-diaclglyerol, a critical step in the synthesis of all major yeast phospholipids; human homolog CDS1 can complement yeast cds1 null mutant
Top 10 interactors (score): PIS1 (0.998); CHO1 (0.993); PGS1 (0.989); CRD1 (0.988); PAH1 (0.985); TAM41 (0.982); DGK1 (0.98); ALE1 (0.97); SPO14 (0.965); SLC1 (0.964); DPP1 (0.963); LPP1 (0.961); TGL5 (0.952); OPI3 (0.946); LOA1 (0.946); PSD1 (0.944); LRO1 (0.943); TGL4 (0.943); GEP4 (0.917); CHO2 (0.905)
Homologues (species, bitscore): CDS1 (Homo sapiens, 287.3); Cds1 (Mus musculus, 287.3); cds1 (Danio rerio, 296.2); cds1 (Xenopus tropicalis, 235.0); CdsA (Drosophila melanogaster, 280.8); C33H5.18 (Caenorhabditis elegans, 273.1); CDS1 (Arabidopsis thaliana, 317.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:278797-280170:- | gene-YBR029C_AKU4011 | rna-NM_001178377.1_AKU4011 | cds-NP_009585.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:268934-270307:- | gene-YBR029C_BG1 | rna-NM_001178377.1_BG1 | cds-NP_009585.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:482220-483593:- | gene-YBR029C_Bruggeman | rna-NM_001178377.1_Bruggeman | cds-NP_009585.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:282964-284337:- | gene-YBR029C_CAT1 | rna-NM_001178377.1_CAT1 | cds-NP_009585.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:270841-272214:- | gene-YBR029C_CBS1585 | rna-NM_001178377.1_CBS1585 | cds-NP_009585.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:279100-280473:- | gene-YBR029C_CBS436 | rna-NM_001178377.1_CBS436 | cds-NP_009585.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:369347-370720:- | gene-YBR029C_CBS6412 | rna-NM_001178377.1_CBS6412 | cds-NP_009585.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:276208-277581:- | gene-YBR029C_CBS6413 | rna-NM_001178377.1_CBS6413 | cds-NP_009585.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:290114-291487:- | gene-YBR029C_CENPK1137D | rna-NM_001178377.1_CENPK1137D | cds-NP_009585.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:405812-407185:- | gene-YBR029C_EthanolRed | rna-NM_001178377.1_EthanolRed | cds-NP_009585.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:293907-295280:- | gene-YBR029C_FaliES1 | rna-NM_001178377.1_FaliES1 | cds-NP_009585.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000048.1:2312-3685:+ | gene-YBR029C_JAY291 | rna-NM_001178377.1_JAY291 | cds-NP_009585.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:280126-281499:- | gene-YBR029C_MUCL30387 | rna-NM_001178377.1_MUCL30387 | cds-NP_009585.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:280383-281756:- | gene-YBR029C_MUCL30388 | rna-NM_001178377.1_MUCL30388 | cds-NP_009585.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:270830-272203:- | gene-YBR029C_MUCL39482 | rna-NM_001178377.1_MUCL39482 | cds-NP_009585.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:278273-279646:- | gene-YBR029C_MUCL42920 | rna-NM_001178377.1_MUCL42920 | cds-NP_009585.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:296166-297539:- | gene-YBR029C_NCIM3186 | rna-NM_001178377.1_NCIM3186 | cds-NP_009585.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:271994-273367:- | gene-YBR029C_NCYC1407 | rna-NM_001178377.1_NCYC1407 | cds-NP_009585.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:284178-285551:- | gene-YBR029C_PE2H3 | rna-NM_001178377.1_PE2H3 | cds-NP_009585.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:281844-283217:- | gene-YBR029C_PE2H4 | rna-NM_001178377.1_PE2H4 | cds-NP_009585.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:296369-297742:- | gene-YBR029C_S288C | rna-NM_001178377.1_S288C | cds-NP_009585.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000143.1:260-1633:- | gene-YBR029C_SA1 | rna-NM_001178377.1_SA1 | cds-NP_009585.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:293615-294988:- | gene-YBR029C_ThermosaccDry | rna-NM_001178377.1_ThermosaccDry | cds-NP_009585.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:275530-276903:- | gene-YBR029C_VR1 | rna-NM_001178377.1_VR1 | cds-NP_009585.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:269591-270964:- | gene-YBR029C_ZTW1 | rna-NM_001178377.1_ZTW1 | cds-NP_009585.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:305827-307200:- | gene-YBR029C_Sparadoxus | rna-NM_001178377.1_Sparadoxus | cds-NP_009585.1_Sparadoxus | 93.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |