Gene name: CDD1
Reference locus (S288C): YLR245C
Gene biotype: protein_coding
Description: Cytidine deaminase; catalyzes the modification of cytidine to uridine in vitro but native RNA substrates have not been identified, localizes to both the nucleus and cytoplasm
Top 10 interactors (score): URK1 (0.997); DCD1 (0.992); URH1 (0.991); PNP1 (0.989); FCY1 (0.939); DAS2 (0.93); RIB2 (0.912); URA2 (0.907); TAD3 (0.903); TAD2 (0.9); URA6 (0.893); TAD1 (0.889); UNG1 (0.874); ERV1 (0.85); URA5 (0.775); GCD7 (0.769); YLR256W-A (0.749); MUK1 (0.743); URA3 (0.738); RPB8 (0.686)
Homologues (species, bitscore): CDA (Homo sapiens, 101.3); Cda (Mus musculus, 97.1); LOC559958 (Danio rerio, 112.1); CG8360 (Drosophila melanogaster, 96.3); cdd-1 (Caenorhabditis elegans, 99.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:580715-581143:- | gene-YLR245C_AKU4011 | rna-NM_001182132.1_AKU4011 | cds-NP_013346.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:150754-151182:+ | gene-YLR245C_BG1 | rna-NM_001182132.1_BG1 | cds-NP_013346.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:614952-615380:- | gene-YLR245C_Bruggeman | rna-NM_001182132.1_Bruggeman | cds-NP_013346.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:614076-614504:- | gene-YLR245C_CAT1 | rna-NM_001182132.1_CAT1 | cds-NP_013346.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:616210-616638:- | gene-YLR245C_CBS1585 | rna-NM_001182132.1_CBS1585 | cds-NP_013346.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:600417-600845:- | gene-YLR245C_CBS436 | rna-NM_001182132.1_CBS436 | cds-NP_013346.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:579185-579613:- | gene-YLR245C_CBS6412 | rna-NM_001182132.1_CBS6412 | cds-NP_013346.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:616505-616933:- | gene-YLR245C_CBS6413 | rna-NM_001182132.1_CBS6413 | cds-NP_013346.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:611113-611541:- | gene-YLR245C_CENPK1137D | rna-NM_001182132.1_CENPK1137D | cds-NP_013346.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:574247-574675:- | gene-YLR245C_EthanolRed | rna-NM_001182132.1_EthanolRed | cds-NP_013346.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:603172-603600:- | gene-YLR245C_FaliES1 | rna-NM_001182132.1_FaliES1 | cds-NP_013346.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000136.1:55274-55702:+ | gene-YLR245C_JAY291 | rna-NM_001182132.1_JAY291 | cds-NP_013346.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:615808-616236:- | gene-YLR245C_MUCL30387 | rna-NM_001182132.1_MUCL30387 | cds-NP_013346.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:619929-620357:- | gene-YLR245C_MUCL30388 | rna-NM_001182132.1_MUCL30388 | cds-NP_013346.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:617191-617619:- | gene-YLR245C_MUCL39482 | rna-NM_001182132.1_MUCL39482 | cds-NP_013346.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:611952-612380:- | gene-YLR245C_MUCL42920 | rna-NM_001182132.1_MUCL42920 | cds-NP_013346.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:626476-626904:- | gene-YLR245C_NCIM3186 | rna-NM_001182132.1_NCIM3186 | cds-NP_013346.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:604177-604605:- | gene-YLR245C_NCYC1407 | rna-NM_001182132.1_NCYC1407 | cds-NP_013346.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:607908-608336:- | gene-YLR245C_PE2H3 | rna-NM_001182132.1_PE2H3 | cds-NP_013346.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:607652-608080:- | gene-YLR245C_PE2H4 | rna-NM_001182132.1_PE2H4 | cds-NP_013346.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:626502-626930:- | gene-YLR245C_S288C | rna-NM_001182132.1_S288C | cds-NP_013346.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:55537-55965:+ | gene-YLR245C_SA1 | rna-NM_001182132.1_SA1 | cds-NP_013346.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:605672-606100:- | gene-YLR245C_ThermosaccDry | rna-NM_001182132.1_ThermosaccDry | cds-NP_013346.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:617022-617450:- | gene-YLR245C_VR1 | rna-NM_001182132.1_VR1 | cds-NP_013346.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:129986-130414:- | gene-YLR245C_ZTW1 | rna-NM_001182132.1_ZTW1 | cds-NP_013346.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:591175-591603:- | gene-YLR245C_Sparadoxus | rna-NM_001182132.1_Sparadoxus | cds-NP_013346.1_Sparadoxus | 88.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |