Gene name: CDC60
Reference locus (S288C): YPL160W
Gene biotype: protein_coding
Description: Leucine--tRNA ligase, cytoplasmic; Cytosolic leucyl tRNA synthetase; ligates leucine to the appropriate tRNA; human homolog LARS can complement yeast temperature-sensitive mutant at restrictive temperature
Top 10 interactors (score): MES1 (0.999); KRS1 (0.999); ILS1 (0.999); GUS1 (0.999); VAS1 (0.999); GLN4 (0.999); YHR020W (0.999); ARC1 (0.998); DPS1 (0.997); TYS1 (0.994); YDR341C (0.991); DED81 (0.99); SES1 (0.988); ALA1 (0.988); THS1 (0.986); ISM1 (0.985); YNL247W (0.984); KGD1 (0.975); MSK1 (0.974); HTS1 (0.971)
Homologues (species, bitscore): LARS (Homo sapiens, 920.2); Lars (Mus musculus, 927.2); larsb (Danio rerio, 575.1); lars (Xenopus tropicalis, 917.5); CG33123 (Drosophila melanogaster, 874.8); lars-1 (Caenorhabditis elegans, 859.8); AT1G09620 (Arabidopsis thaliana, 846.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:224654-227926:+ | gene-YPL160W_AKU4011 | rna-NM_001183974.1_AKU4011 | cds-NP_015165.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:430322-433594:+ | gene-YPL160W_BG1 | rna-NM_001183974.1_BG1 | cds-NP_015165.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:250645-253917:+ | gene-YPL160W_Bruggeman | rna-NM_001183974.1_Bruggeman | cds-NP_015165.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:247311-250583:+ | gene-YPL160W_CAT1 | rna-NM_001183974.1_CAT1 | cds-NP_015165.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:228717-231989:+ | gene-YPL160W_CBS1585 | rna-NM_001183974.1_CBS1585 | cds-NP_015165.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:243374-246646:+ | gene-YPL160W_CBS436 | rna-NM_001183974.1_CBS436 | cds-NP_015165.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:233395-236667:+ | gene-YPL160W_CBS6412 | rna-NM_001183974.1_CBS6412 | cds-NP_015165.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:225357-228629:+ | gene-YPL160W_CBS6413 | rna-NM_001183974.1_CBS6413 | cds-NP_015165.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:246874-250146:+ | gene-YPL160W_CENPK1137D | rna-NM_001183974.1_CENPK1137D | cds-NP_015165.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:223384-226656:+ | gene-YPL160W_EthanolRed | rna-NM_001183974.1_EthanolRed | cds-NP_015165.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:230976-234248:+ | gene-YPL160W_FaliES1 | rna-NM_001183974.1_FaliES1 | cds-NP_015165.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:131650-134922:- | gene-YPL160W_JAY291 | rna-NM_001183974.1_JAY291 | cds-NP_015165.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:241887-245159:+ | gene-YPL160W_MUCL30387 | rna-NM_001183974.1_MUCL30387 | cds-NP_015165.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:239904-243176:+ | gene-YPL160W_MUCL30388 | rna-NM_001183974.1_MUCL30388 | cds-NP_015165.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:222046-225318:+ | gene-YPL160W_MUCL39482 | rna-NM_001183974.1_MUCL39482 | cds-NP_015165.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:278775-282047:+ | gene-YPL160W_MUCL42920 | rna-NM_001183974.1_MUCL42920 | cds-NP_015165.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:246973-250245:+ | gene-YPL160W_NCIM3186 | rna-NM_001183974.1_NCIM3186 | cds-NP_015165.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:228509-231781:+ | gene-YPL160W_NCYC1407 | rna-NM_001183974.1_NCYC1407 | cds-NP_015165.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:235936-239208:+ | gene-YPL160W_PE2H3 | rna-NM_001183974.1_PE2H3 | cds-NP_015165.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:235579-238851:+ | gene-YPL160W_PE2H4 | rna-NM_001183974.1_PE2H4 | cds-NP_015165.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:246990-250262:+ | gene-YPL160W_S288C | rna-NM_001183974.1_S288C | cds-NP_015165.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:123424-126696:- | gene-YPL160W_SA1 | rna-NM_001183974.1_SA1 | cds-NP_015165.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:230774-234046:+ | gene-YPL160W_ThermosaccDry | rna-NM_001183974.1_ThermosaccDry | cds-NP_015165.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:245707-248979:+ | gene-YPL160W_VR1 | rna-NM_001183974.1_VR1 | cds-NP_015165.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:230103-233375:+ | gene-YPL160W_ZTW1 | rna-NM_001183974.1_ZTW1 | cds-NP_015165.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:231723-234998:+ | gene-YPL160W_Sparadoxus | rna-NM_001183974.1_Sparadoxus | cds-NP_015165.1_Sparadoxus | 92.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |