Gene name: CDC50
Reference locus (S288C): YCR094W
Gene biotype: protein_coding
Description: Cell division control protein 50; Endosomal protein that interacts with phospholipid flippase Drs2p; interaction with Cdc50p is essential for Drs2p catalytic activity; mutations affect cell polarity and polarized growth; similar to Lem3p; CDC50 has a paralog, YNR048W, that arose from the whole genome duplication
Top 10 interactors (score): DRS2 (0.999); DNF1 (0.998); DNF3 (0.994); DNF2 (0.973); NEO1 (0.97); RCY1 (0.915); LEM3 (0.909); SNC1 (0.874); CHO1 (0.717); YPT31 (0.707); GCS1 (0.698); GEA2 (0.696); KIN82 (0.695); PAN2 (0.684); KES1 (0.683); YPT52 (0.66); YPT10 (0.652); MON2 (0.644); SEC7 (0.641); SWA2 (0.635)
Homologues (species, bitscore): TMEM30A (Homo sapiens, 211.1); Tmem30a (Mus musculus, 205.7); tmem30ab (Danio rerio, 211.1); tmem30a (Xenopus tropicalis, 210.7); CG9947 (Drosophila melanogaster, 204.9); chat-1 (Caenorhabditis elegans, 197.6); ALIS1 (Arabidopsis thaliana, 175.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:281702-282877:+ | gene-YCR094W_AKU4011 | rna-NM_001178800.1_AKU4011 | cds-NP_010018.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:140004-141179:+ | gene-YCR094W_BG1 | rna-NM_001178800.1_BG1 | cds-NP_010018.1_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:278514-279689:+ | gene-YCR094W_Bruggeman | rna-NM_001178800.1_Bruggeman | cds-NP_010018.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:288509-289684:+ | gene-YCR094W_CAT1 | rna-NM_001178800.1_CAT1 | cds-NP_010018.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:276449-277624:+ | gene-YCR094W_CBS1585 | rna-NM_001178800.1_CBS1585 | cds-NP_010018.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:287841-289016:+ | gene-YCR094W_CBS436 | rna-NM_001178800.1_CBS436 | cds-NP_010018.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:267596-268771:+ | gene-YCR094W_CBS6412 | rna-NM_001178800.1_CBS6412 | cds-NP_010018.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:282148-283323:+ | gene-YCR094W_CBS6413 | rna-NM_001178800.1_CBS6413 | cds-NP_010018.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:285993-287168:+ | gene-YCR094W_CENPK1137D | rna-NM_001178800.1_CENPK1137D | cds-NP_010018.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:277347-278522:+ | gene-YCR094W_EthanolRed | rna-NM_001178800.1_EthanolRed | cds-NP_010018.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:283447-284622:+ | gene-YCR094W_FaliES1 | rna-NM_001178800.1_FaliES1 | cds-NP_010018.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000323.1:5189-6364:- | gene-YCR094W_JAY291 | rna-NM_001178800.1_JAY291 | cds-NP_010018.1_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:275315-276490:+ | gene-YCR094W_MUCL30387 | rna-NM_001178800.1_MUCL30387 | cds-NP_010018.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:274136-275311:+ | gene-YCR094W_MUCL30388 | rna-NM_001178800.1_MUCL30388 | cds-NP_010018.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:283093-284268:+ | gene-YCR094W_MUCL39482 | rna-NM_001178800.1_MUCL39482 | cds-NP_010018.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:279304-280479:+ | gene-YCR094W_MUCL42920 | rna-NM_001178800.1_MUCL42920 | cds-NP_010018.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:286394-287569:+ | gene-YCR094W_NCIM3186 | rna-NM_001178800.1_NCIM3186 | cds-NP_010018.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:283736-284911:+ | gene-YCR094W_NCYC1407 | rna-NM_001178800.1_NCYC1407 | cds-NP_010018.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:298022-299197:+ | gene-YCR094W_PE2H3 | rna-NM_001178800.1_PE2H3 | cds-NP_010018.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:286574-287749:+ | gene-YCR094W_PE2H4 | rna-NM_001178800.1_PE2H4 | cds-NP_010018.1_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:286762-287937:+ | gene-YCR094W_S288C | rna-NM_001178800.1_S288C | cds-NP_010018.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000044.1:86748-87923:+ | gene-YCR094W_SA1 | rna-NM_001178800.1_SA1 | cds-NP_010018.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:283401-284576:+ | gene-YCR094W_ThermosaccDry | rna-NM_001178800.1_ThermosaccDry | cds-NP_010018.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:293562-294737:+ | gene-YCR094W_VR1 | rna-NM_001178800.1_VR1 | cds-NP_010018.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:280105-281280:+ | gene-YCR094W_ZTW1 | rna-NM_001178800.1_ZTW1 | cds-NP_010018.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:314480-315652:+ | gene-YCR094W_Sparadoxus | rna-NM_001178800.1_Sparadoxus | cds-NP_010018.1_Sparadoxus | 90.6 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |