Gene name: CDC43
Reference locus (S288C): YGL155W
Gene biotype: protein_coding
Description: Beta subunit of geranylgeranyltransferase type I; subunit of the Ram2p-Cdc43p heterodimer that catalyzes the geranylgeranylation of the cysteine residue in proteins containing a C-terminal CaaX sequence ending in Leu or Phe; has substrates important for morphogenesis
Top 10 interactors (score): RAM2 (0.999); CDC42 (0.947); RHO1 (0.944); RCE1 (0.929); BET4 (0.901); STE14 (0.898); STE24 (0.885); SAM50 (0.701); MEU1 (0.656); RHO4 (0.655); ERG9 (0.642); ERG20 (0.639); RHO2 (0.622); GPI18 (0.621); UIP4 (0.572); CDC24 (0.535); MNN10 (0.525); BTS1 (0.521); RER2 (0.52); UBP13 (0.485)
Homologues (species, bitscore): PGGT1B (Homo sapiens, 103.2); Pggt1b (Mus musculus, 107.1); pggt1b (Danio rerio, 96.3); pggt1b (Xenopus tropicalis, 102.8); betaggt-I (Drosophila melanogaster, 110.5); fntb-1 (Caenorhabditis elegans, 98.6); PGGT-I (Arabidopsis thaliana, 111.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:216677-217807:+ | gene-YGL155W_AKU4011 | rna-NM_001181020.1_AKU4011 | cds-NP_011360.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:187149-188279:- | gene-YGL155W_BG1 | rna-NM_001181020.1_BG1 | cds-NP_011360.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:218820-219950:+ | gene-YGL155W_Bruggeman | rna-NM_001181020.1_Bruggeman | cds-NP_011360.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:214687-215817:+ | gene-YGL155W_CAT1 | rna-NM_001181020.1_CAT1 | cds-NP_011360.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:220060-221190:+ | gene-YGL155W_CBS1585 | rna-NM_001181020.1_CBS1585 | cds-NP_011360.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:214669-215799:+ | gene-YGL155W_CBS436 | rna-NM_001181020.1_CBS436 | cds-NP_011360.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:206269-207399:+ | gene-YGL155W_CBS6412 | rna-NM_001181020.1_CBS6412 | cds-NP_011360.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:214613-215743:+ | gene-YGL155W_CBS6413 | rna-NM_001181020.1_CBS6413 | cds-NP_011360.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:214343-215473:+ | gene-YGL155W_CENPK1137D | rna-NM_001181020.1_CENPK1137D | cds-NP_011360.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:206821-207951:+ | gene-YGL155W_EthanolRed | rna-NM_001181020.1_EthanolRed | cds-NP_011360.1_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:208067-209197:+ | gene-YGL155W_FaliES1 | rna-NM_001181020.1_FaliES1 | cds-NP_011360.1_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000090.1:57889-59019:+ | gene-YGL155W_JAY291 | rna-NM_001181020.1_JAY291 | cds-NP_011360.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:216045-217175:+ | gene-YGL155W_MUCL30387 | rna-NM_001181020.1_MUCL30387 | cds-NP_011360.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:219160-220290:+ | gene-YGL155W_MUCL30388 | rna-NM_001181020.1_MUCL30388 | cds-NP_011360.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:216840-217970:+ | gene-YGL155W_MUCL39482 | rna-NM_001181020.1_MUCL39482 | cds-NP_011360.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:219396-220526:+ | gene-YGL155W_MUCL42920 | rna-NM_001181020.1_MUCL42920 | cds-NP_011360.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:214081-215211:+ | gene-YGL155W_NCIM3186 | rna-NM_001181020.1_NCIM3186 | cds-NP_011360.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:208304-209434:+ | gene-YGL155W_NCYC1407 | rna-NM_001181020.1_NCYC1407 | cds-NP_011360.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:210191-211321:+ | gene-YGL155W_PE2H3 | rna-NM_001181020.1_PE2H3 | cds-NP_011360.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:215186-216316:+ | gene-YGL155W_PE2H4 | rna-NM_001181020.1_PE2H4 | cds-NP_011360.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:214081-215211:+ | gene-YGL155W_S288C | rna-NM_001181020.1_S288C | cds-NP_011360.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000081.1:39538-40668:- | gene-YGL155W_SA1 | rna-NM_001181020.1_SA1 | cds-NP_011360.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:208296-209426:+ | gene-YGL155W_ThermosaccDry | rna-NM_001181020.1_ThermosaccDry | cds-NP_011360.1_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:215105-216235:+ | gene-YGL155W_VR1 | rna-NM_001181020.1_VR1 | cds-NP_011360.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:206401-207531:+ | gene-YGL155W_ZTW1 | rna-NM_001181020.1_ZTW1 | cds-NP_011360.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:212462-213585:+ | gene-YGL155W_Sparadoxus | rna-NM_001181020.1_Sparadoxus | cds-NP_011360.1_Sparadoxus | 87.2 | 99.3 | Verified | 1 | 1 | 0 | False | False | False | True | False |