Gene name: CDC42
Reference locus (S288C): YLR229C
Gene biotype: protein_coding
Description: Cell division control protein 42; Small rho-like GTPase; essential for establishment and maintenance of cell polarity; plays a role late in cell fusion via activation of key cell fusion regulator Fus2p; mutants have defects in the organization of actin and septins; human homolog CDC42 can complement yeast cdc42 mutant
Top 10 interactors (score): EXO70 (0.999); SKM1 (0.999); LAS17 (0.999); CLA4 (0.999); BEM1 (0.999); RDI1 (0.999); BNI1 (0.999); RGA1 (0.999); STE20 (0.999); CDC24 (0.999); BZZ1 (0.999); IQG1 (0.999); RGA2 (0.998); ACT1 (0.998); GIC1 (0.998); BEM3 (0.998); GIC2 (0.998); PKC1 (0.997); SHO1 (0.997); SEC15 (0.995)
Homologues (species, bitscore): CDC42 (Homo sapiens, 325.5); Cdc42 (Mus musculus, 325.5); cdc42 (Danio rerio, 324.7); cdc42 (Xenopus tropicalis, 324.3); Cdc42 (Drosophila melanogaster, 322.4); cdc-42 (Caenorhabditis elegans, 317.4); RAC3 (Arabidopsis thaliana, 222.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:558374-558949:- | gene-YLR229C_AKU4011 | rna-NM_001182116.1_AKU4011 | cds-NP_013330.1_AKU4011 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000082.1:12435-13010:- | gene-YLR229C_BG1 | rna-NM_001182116.1_BG1 | cds-NP_013330.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:592658-593233:- | gene-YLR229C_Bruggeman | rna-NM_001182116.1_Bruggeman | cds-NP_013330.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:591781-592356:- | gene-YLR229C_CAT1 | rna-NM_001182116.1_CAT1 | cds-NP_013330.1_CAT1 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:593868-594443:- | gene-YLR229C_CBS1585 | rna-NM_001182116.1_CBS1585 | cds-NP_013330.1_CBS1585 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:578125-578700:- | gene-YLR229C_CBS436 | rna-NM_001182116.1_CBS436 | cds-NP_013330.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:556843-557418:- | gene-YLR229C_CBS6412 | rna-NM_001182116.1_CBS6412 | cds-NP_013330.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:594163-594738:- | gene-YLR229C_CBS6413 | rna-NM_001182116.1_CBS6413 | cds-NP_013330.1_CBS6413 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:588823-589398:- | gene-YLR229C_CENPK1137D | rna-NM_001182116.1_CENPK1137D | cds-NP_013330.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:551955-552530:- | gene-YLR229C_EthanolRed | rna-NM_001182116.1_EthanolRed | cds-NP_013330.1_EthanolRed | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:580880-581455:- | gene-YLR229C_FaliES1 | rna-NM_001182116.1_FaliES1 | cds-NP_013330.1_FaliES1 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000227.1:671-1246:+ | gene-YLR229C_JAY291 | rna-NM_001182116.1_JAY291 | cds-NP_013330.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:593518-594093:- | gene-YLR229C_MUCL30387 | rna-NM_001182116.1_MUCL30387 | cds-NP_013330.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:597638-598213:- | gene-YLR229C_MUCL30388 | rna-NM_001182116.1_MUCL30388 | cds-NP_013330.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:594849-595424:- | gene-YLR229C_MUCL39482 | rna-NM_001182116.1_MUCL39482 | cds-NP_013330.1_MUCL39482 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:589658-590233:- | gene-YLR229C_MUCL42920 | rna-NM_001182116.1_MUCL42920 | cds-NP_013330.1_MUCL42920 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:604186-604761:- | gene-YLR229C_NCIM3186 | rna-NM_001182116.1_NCIM3186 | cds-NP_013330.1_NCIM3186 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:581838-582413:- | gene-YLR229C_NCYC1407 | rna-NM_001182116.1_NCYC1407 | cds-NP_013330.1_NCYC1407 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:585600-586175:- | gene-YLR229C_PE2H3 | rna-NM_001182116.1_PE2H3 | cds-NP_013330.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:585344-585919:- | gene-YLR229C_PE2H4 | rna-NM_001182116.1_PE2H4 | cds-NP_013330.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:604212-604787:- | gene-YLR229C_S288C | rna-NM_001182116.1_S288C | cds-NP_013330.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:77686-78261:+ | gene-YLR229C_SA1 | rna-NM_001182116.1_SA1 | cds-NP_013330.1_SA1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:583380-583955:- | gene-YLR229C_ThermosaccDry | rna-NM_001182116.1_ThermosaccDry | cds-NP_013330.1_ThermosaccDry | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:594714-595289:- | gene-YLR229C_VR1 | rna-NM_001182116.1_VR1 | cds-NP_013330.1_VR1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:107668-108243:- | gene-YLR229C_ZTW1 | rna-NM_001182116.1_ZTW1 | cds-NP_013330.1_ZTW1 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:568833-569408:- | gene-YLR229C_Sparadoxus | rna-NM_001182116.1_Sparadoxus | cds-NP_013330.1_Sparadoxus | 96.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |