Gene name: CDC36
Reference locus (S288C): YDL165W
Gene biotype: protein_coding
Description: General negative regulator of transcription subunit 2; Component of the CCR4-NOT core complex, involved in mRNA decapping; this complex has multiple roles in regulating mRNA levels including regulation of transcription and destabilizing mRNAs through deadenylation; basal transcription factor
Top 10 interactors (score): CAF40 (0.999); NOT5 (0.999); POP2 (0.999); NOT3 (0.999); CCR4 (0.999); CDC39 (0.999); MOT2 (0.999); CAF130 (0.989); MTR4 (0.965); CAF16 (0.958); DHH1 (0.942); BTT1 (0.936); SKI6 (0.928); RRP42 (0.919); XRN1 (0.918); CAF4 (0.824); CCT4 (0.809); NGL1 (0.78); PAT1 (0.775); RRP15 (0.775)
Homologues (species, bitscore): CNOT2 (Homo sapiens, 87.4); cnot2 (Danio rerio, 87.0); cnot2 (Xenopus tropicalis, 86.7); Rga (Drosophila melanogaster, 72.4); ntl-2 (Caenorhabditis elegans, 67.0); AT1G07705 (Arabidopsis thaliana, 84.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:148706-149281:+ | gene-YDL165W_AKU4011 | rna-NM_001180225.1_AKU4011 | cds-NP_010116.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:400448-401023:- | gene-YDL165W_BG1 | rna-NM_001180225.1_BG1 | cds-NP_010116.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:164772-165347:+ | gene-YDL165W_Bruggeman | rna-NM_001180225.1_Bruggeman | cds-NP_010116.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:163078-163653:+ | gene-YDL165W_CAT1 | rna-NM_001180225.1_CAT1 | cds-NP_010116.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:146742-147317:+ | gene-YDL165W_CBS1585 | rna-NM_001180225.1_CBS1585 | cds-NP_010116.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:163703-164278:+ | gene-YDL165W_CBS436 | rna-NM_001180225.1_CBS436 | cds-NP_010116.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:146357-146932:+ | gene-YDL165W_CBS6412 | rna-NM_001180225.1_CBS6412 | cds-NP_010116.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:165168-165743:+ | gene-YDL165W_CBS6413 | rna-NM_001180225.1_CBS6413 | cds-NP_010116.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:162965-163540:+ | gene-YDL165W_CENPK1137D | rna-NM_001180225.1_CENPK1137D | cds-NP_010116.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:160168-160743:+ | gene-YDL165W_EthanolRed | rna-NM_001180225.1_EthanolRed | cds-NP_010116.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:165494-166069:+ | gene-YDL165W_FaliES1 | rna-NM_001180225.1_FaliES1 | cds-NP_010116.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000032.1:53494-54069:- | gene-YDL165W_JAY291 | rna-NM_001180225.1_JAY291 | cds-NP_010116.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:163068-163643:+ | gene-YDL165W_MUCL30387 | rna-NM_001180225.1_MUCL30387 | cds-NP_010116.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:154717-155292:+ | gene-YDL165W_MUCL30388 | rna-NM_001180225.1_MUCL30388 | cds-NP_010116.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:147885-148460:+ | gene-YDL165W_MUCL39482 | rna-NM_001180225.1_MUCL39482 | cds-NP_010116.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000307.1:20901-21476:- | gene-YDL165W_MUCL42920 | rna-NM_001180225.1_MUCL42920 | cds-NP_010116.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:164213-164788:+ | gene-YDL165W_NCIM3186 | rna-NM_001180225.1_NCIM3186 | cds-NP_010116.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:147825-148400:+ | gene-YDL165W_NCYC1407 | rna-NM_001180225.1_NCYC1407 | cds-NP_010116.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:155070-155645:+ | gene-YDL165W_PE2H3 | rna-NM_001180225.1_PE2H3 | cds-NP_010116.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:155074-155649:+ | gene-YDL165W_PE2H4 | rna-NM_001180225.1_PE2H4 | cds-NP_010116.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:164290-164865:+ | gene-YDL165W_S288C | rna-NM_001180225.1_S288C | cds-NP_010116.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000043.1:29843-30418:+ | gene-YDL165W_SA1 | rna-NM_001180225.1_SA1 | cds-NP_010116.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:165254-165829:+ | gene-YDL165W_ThermosaccDry | rna-NM_001180225.1_ThermosaccDry | cds-NP_010116.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:165841-166416:+ | gene-YDL165W_VR1 | rna-NM_001180225.1_VR1 | cds-NP_010116.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:163385-163960:+ | gene-YDL165W_ZTW1 | rna-NM_001180225.1_ZTW1 | cds-NP_010116.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:165493-166068:+ | gene-YDL165W_Sparadoxus | rna-NM_001180225.1_Sparadoxus | cds-NP_010116.1_Sparadoxus | 90.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |