Gene name: CDC27
Reference locus (S288C): YBL084C
Gene biotype: protein_coding
Description: Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C); APC/C is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition
Top 10 interactors (score): DOC1 (0.999); APC11 (0.999); SWM1 (0.999); APC1 (0.999); MND2 (0.999); APC9 (0.999); CDC26 (0.999); APC5 (0.999); CDH1 (0.999); CDC23 (0.999); APC2 (0.999); CDC20 (0.999); APC4 (0.999); CDC16 (0.999); AMA1 (0.997); BUB1 (0.997); MAD2 (0.997); MAD3 (0.996); BUB3 (0.991); CDC5 (0.984)
Homologues (species, bitscore): CDC27 (Homo sapiens, 271.9); Cdc27 (Mus musculus, 263.8); cdc27 (Danio rerio, 260.4); cdc27 (Xenopus tropicalis, 261.9); Cdc27 (Drosophila melanogaster, 214.2); mat-1 (Caenorhabditis elegans, 171.4); HBT (Arabidopsis thaliana, 209.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:60722-62997:- | gene-YBL084C_AKU4011 | rna-NM_001178324.2_AKU4011 | cds-NP_009469.2_AKU4011 | 99.0 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:51411-53681:- | gene-YBL084C_BG1 | rna-NM_001178324.2_BG1 | cds-NP_009469.2_BG1 | 99.1 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:61355-63607:- | gene-YBL084C_Bruggeman | rna-NM_001178324.2_Bruggeman | cds-NP_009469.2_Bruggeman | 98.8 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:63272-65566:- | gene-YBL084C_CAT1 | rna-NM_001178324.2_CAT1 | cds-NP_009469.2_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:52805-55096:- | gene-YBL084C_CBS1585 | rna-NM_001178324.2_CBS1585 | cds-NP_009469.2_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:61601-63862:- | gene-YBL084C_CBS436 | rna-NM_001178324.2_CBS436 | cds-NP_009469.2_CBS436 | 99.2 | 99.3 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:52596-54489:- | gene-YBL084C_CBS6412 | rna-NM_001178324.2_CBS6412 | cds-NP_009469.2_CBS6412 | 82.8 | 83.1 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:58883-61141:- | gene-YBL084C_CBS6413 | rna-NM_001178324.2_CBS6413 | cds-NP_009469.2_CBS6413 | 98.8 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:60824-63100:- | gene-YBL084C_CENPK1137D | rna-NM_001178324.2_CENPK1137D | cds-NP_009469.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:74975-77221:- | gene-YBL084C_EthanolRed | rna-NM_001178324.2_EthanolRed | cds-NP_009469.2_EthanolRed | 98.4 | 98.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:75104-77350:- | gene-YBL084C_FaliES1 | rna-NM_001178324.2_FaliES1 | cds-NP_009469.2_FaliES1 | 98.4 | 98.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000019.1:7030-9269:- | gene-YBL084C_JAY291 | rna-NM_001178324.2_JAY291 | cds-NP_009469.2_JAY291 | 98.2 | 98.3 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:60487-62724:- | gene-YBL084C_MUCL30387 | rna-NM_001178324.2_MUCL30387 | cds-NP_009469.2_MUCL30387 | 98.1 | 98.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:62019-64262:- | gene-YBL084C_MUCL30388 | rna-NM_001178324.2_MUCL30388 | cds-NP_009469.2_MUCL30388 | 98.4 | 98.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:52955-55277:- | gene-YBL084C_MUCL39482 | rna-NM_001178324.2_MUCL39482 | cds-NP_009469.2_MUCL39482 | 97.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:59825-62065:- | gene-YBL084C_MUCL42920 | rna-NM_001178324.2_MUCL42920 | cds-NP_009469.2_MUCL42920 | 98.1 | 98.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:66966-69242:- | gene-YBL084C_NCIM3186 | rna-NM_001178324.2_NCIM3186 | cds-NP_009469.2_NCIM3186 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:54630-56888:- | gene-YBL084C_NCYC1407 | rna-NM_001178324.2_NCYC1407 | cds-NP_009469.2_NCYC1407 | 98.8 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:60947-63184:- | gene-YBL084C_PE2H3 | rna-NM_001178324.2_PE2H3 | cds-NP_009469.2_PE2H3 | 98.2 | 98.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:58572-60827:- | gene-YBL084C_PE2H4 | rna-NM_001178324.2_PE2H4 | cds-NP_009469.2_PE2H4 | 98.9 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:67169-69445:- | gene-YBL084C_S288C | rna-NM_001178324.2_S288C | cds-NP_009469.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:51280-53544:- | gene-YBL084C_SA1 | rna-NM_001178324.2_SA1 | cds-NP_009469.2_SA1 | 99.3 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:75065-77311:- | gene-YBL084C_ThermosaccDry | rna-NM_001178324.2_ThermosaccDry | cds-NP_009469.2_ThermosaccDry | 98.4 | 98.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:57258-59516:- | gene-YBL084C_VR1 | rna-NM_001178324.2_VR1 | cds-NP_009469.2_VR1 | 99.1 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:52287-54533:- | gene-YBL084C_ZTW1 | rna-NM_001178324.2_ZTW1 | cds-NP_009469.2_ZTW1 | 98.4 | 98.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:87027-89276:- | gene-YBL084C_Sparadoxus | rna-NM_001178324.2_Sparadoxus | cds-NP_009469.2_Sparadoxus | 90.1 | 98.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |