Gene name: CDC23
Reference locus (S288C): YHR166C
Gene biotype: protein_coding
Description: Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C); APC/C is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition
Top 10 interactors (score): APC9 (0.999); APC4 (0.999); APC5 (0.999); CDC16 (0.999); SWM1 (0.999); APC11 (0.999); DOC1 (0.999); APC1 (0.999); CDC27 (0.999); MND2 (0.999); CDC26 (0.999); CDH1 (0.999); APC2 (0.999); CDC20 (0.999); MAD2 (0.998); BUB3 (0.998); MAD3 (0.994); BUB1 (0.99); CLB2 (0.987); AMA1 (0.985)
Homologues (species, bitscore): CDC23 (Homo sapiens, 250.8); Cdc23 (Mus musculus, 248.8); cdc23 (Danio rerio, 236.9); cdc23 (Xenopus tropicalis, 241.5); Cdc23 (Drosophila melanogaster, 253.8); mat-3 (Caenorhabditis elegans, 171.8); APC8 (Arabidopsis thaliana, 284.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:424264-426144:- | gene-YHR166C_AKU4011 | rna-NM_001179297.1_AKU4011 | cds-NP_012036.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:91594-93474:+ | gene-YHR166C_BG1 | rna-NM_001179297.1_BG1 | cds-NP_012036.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:431505-433385:- | gene-YHR166C_Bruggeman | rna-NM_001179297.1_Bruggeman | cds-NP_012036.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:426910-428790:- | gene-YHR166C_CAT1 | rna-NM_001179297.1_CAT1 | cds-NP_012036.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:423720-425600:- | gene-YHR166C_CBS1585 | rna-NM_001179297.1_CBS1585 | cds-NP_012036.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:421163-423043:- | gene-YHR166C_CBS436 | rna-NM_001179297.1_CBS436 | cds-NP_012036.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:424174-426054:- | gene-YHR166C_CBS6412 | rna-NM_001179297.1_CBS6412 | cds-NP_012036.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:424601-426481:- | gene-YHR166C_CBS6413 | rna-NM_001179297.1_CBS6413 | cds-NP_012036.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:430341-432221:- | gene-YHR166C_CENPK1137D | rna-NM_001179297.1_CENPK1137D | cds-NP_012036.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:482814-484694:- | gene-YHR166C_EthanolRed | rna-NM_001179297.1_EthanolRed | cds-NP_012036.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:425257-427137:- | gene-YHR166C_FaliES1 | rna-NM_001179297.1_FaliES1 | cds-NP_012036.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000017.1:12706-14585:+ | gene-YHR166C_JAY291 | rna-NM_001179297.1_JAY291 | cds-NP_012036.1_JAY291 | 99.9 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:432576-434456:- | gene-YHR166C_MUCL30387 | rna-NM_001179297.1_MUCL30387 | cds-NP_012036.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:432015-433895:- | gene-YHR166C_MUCL30388 | rna-NM_001179297.1_MUCL30388 | cds-NP_012036.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:423631-425511:- | gene-YHR166C_MUCL39482 | rna-NM_001179297.1_MUCL39482 | cds-NP_012036.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:430238-432118:- | gene-YHR166C_MUCL42920 | rna-NM_001179297.1_MUCL42920 | cds-NP_012036.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:437052-438932:- | gene-YHR166C_NCIM3186 | rna-NM_001179297.1_NCIM3186 | cds-NP_012036.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:426090-427970:- | gene-YHR166C_NCYC1407 | rna-NM_001179297.1_NCYC1407 | cds-NP_012036.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:425232-427112:- | gene-YHR166C_PE2H3 | rna-NM_001179297.1_PE2H3 | cds-NP_012036.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:432659-434539:- | gene-YHR166C_PE2H4 | rna-NM_001179297.1_PE2H4 | cds-NP_012036.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:437170-439050:- | gene-YHR166C_S288C | rna-NM_001179297.1_S288C | cds-NP_012036.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000070.1:12765-14645:+ | gene-YHR166C_SA1 | rna-NM_001179297.1_SA1 | cds-NP_012036.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:426340-428220:- | gene-YHR166C_ThermosaccDry | rna-NM_001179297.1_ThermosaccDry | cds-NP_012036.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:434158-436038:- | gene-YHR166C_VR1 | rna-NM_001179297.1_VR1 | cds-NP_012036.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:416580-418460:- | gene-YHR166C_ZTW1 | rna-NM_001179297.1_ZTW1 | cds-NP_012036.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:422673-424553:- | gene-YHR166C_Sparadoxus | rna-NM_001179297.1_Sparadoxus | cds-NP_012036.1_Sparadoxus | 92.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |