Gene name: CDC13
Reference locus (S288C): YDL220C
Gene biotype: protein_coding
Description: Cell division control protein 13; Single stranded DNA-binding protein found at TG1-3 telomere G-tails; key roles in regulation of telomerase, telomere end protection, conventional telomere replication; regulates telomere replication through recruitment of specific sub-complexes, essential function is telomere capping; forms homodimer via N-terminus; disruption of dimerization leads to short telomeres; autophagy and proteasome are involved in Cdc13p degradation; differentially phosphorylated through cell cycle
Top 10 interactors (score): STN1 (0.999); EST1 (0.999); TEN1 (0.999); POL1 (0.999); RIF2 (0.99); RAD9 (0.989); EXO1 (0.988); YKU80 (0.985); MEC1 (0.978); YKU70 (0.978); EST3 (0.978); RIF1 (0.977); EST2 (0.969); TEL1 (0.968); RAD24 (0.967); PIF1 (0.965); RAP1 (0.959); RAD53 (0.941); CHK1 (0.929); RAD52 (0.91)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:45733-48507:- | gene-YDL220C_AKU4011 | rna-NM_001180280.1_AKU4011 | cds-NP_010061.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000077.1:18560-21334:+ | gene-YDL220C_BG1 | rna-NM_001180280.1_BG1 | cds-NP_010061.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:61414-64188:- | gene-YDL220C_Bruggeman | rna-NM_001180280.1_Bruggeman | cds-NP_010061.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:281262-284036:- | gene-YDL220C_CAT1 | rna-NM_001180280.1_CAT1 | cds-NP_010061.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:44608-47382:- | gene-YDL220C_CBS1585 | rna-NM_001180280.1_CBS1585 | cds-NP_010061.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:259493-262267:- | gene-YDL220C_CBS436 | rna-NM_001180280.1_CBS436 | cds-NP_010061.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:44720-47494:- | gene-YDL220C_CBS6412 | rna-NM_001180280.1_CBS6412 | cds-NP_010061.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:62243-65017:- | gene-YDL220C_CBS6413 | rna-NM_001180280.1_CBS6413 | cds-NP_010061.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:60910-63684:- | gene-YDL220C_CENPK1137D | rna-NM_001180280.1_CENPK1137D | cds-NP_010061.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:58181-60955:- | gene-YDL220C_EthanolRed | rna-NM_001180280.1_EthanolRed | cds-NP_010061.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:62508-65282:- | gene-YDL220C_FaliES1 | rna-NM_001180280.1_FaliES1 | cds-NP_010061.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000213.1:16837-19611:- | gene-YDL220C_JAY291 | rna-NM_001180280.1_JAY291 | cds-NP_010061.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:60362-63136:- | gene-YDL220C_MUCL30387 | rna-NM_001180280.1_MUCL30387 | cds-NP_010061.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:268180-270954:- | gene-YDL220C_MUCL30388 | rna-NM_001180280.1_MUCL30388 | cds-NP_010061.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:45451-48225:- | gene-YDL220C_MUCL39482 | rna-NM_001180280.1_MUCL39482 | cds-NP_010061.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:61511-64285:- | gene-YDL220C_MUCL42920 | rna-NM_001180280.1_MUCL42920 | cds-NP_010061.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:62167-64941:- | gene-YDL220C_NCIM3186 | rna-NM_001180280.1_NCIM3186 | cds-NP_010061.1_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:45408-48182:- | gene-YDL220C_NCYC1407 | rna-NM_001180280.1_NCYC1407 | cds-NP_010061.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:52450-55224:- | gene-YDL220C_PE2H3 | rna-NM_001180280.1_PE2H3 | cds-NP_010061.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:52460-55234:- | gene-YDL220C_PE2H4 | rna-NM_001180280.1_PE2H4 | cds-NP_010061.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:62244-65018:- | gene-YDL220C_S288C | rna-NM_001180280.1_S288C | cds-NP_010061.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000094.1:16645-19419:- | gene-YDL220C_SA1 | rna-NM_001180280.1_SA1 | cds-NP_010061.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:62263-65037:- | gene-YDL220C_ThermosaccDry | rna-NM_001180280.1_ThermosaccDry | cds-NP_010061.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:63217-65991:- | gene-YDL220C_VR1 | rna-NM_001180280.1_VR1 | cds-NP_010061.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:61431-64205:- | gene-YDL220C_ZTW1 | rna-NM_001180280.1_ZTW1 | cds-NP_010061.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:64841-67609:- | gene-YDL220C_Sparadoxus | rna-NM_001180280.1_Sparadoxus | cds-NP_010061.1_Sparadoxus | 85.4 | 99.2 | Verified | 1 | 1 | 0 | False | False | False | True | False |