Gene name: CCW12
Reference locus (S288C): YLR110C
Gene biotype: protein_coding
Description: Cell wall mannoprotein; plays a role in maintenance of newly synthesized areas of cell wall; localizes to periphery of small buds, septum region of larger buds, and shmoo tip; CCW12 has a paralog, YDR134C, that arose from the whole genome duplication
Top 10 interactors (score): TDH3 (0.944); CWP2 (0.938); FBA1 (0.904); SED1 (0.863); CHS7 (0.823); SRL1 (0.822); TEF1 (0.82); HYP2 (0.775); L9354.4 (0.771); PGK1 (0.766); ADH1 (0.764); MID2 (0.746); TDH2 (0.741); SLT2 (0.733); MNN10 (0.725); CCW14 (0.696); GAS1 (0.693); SCW4 (0.689); SKT5 (0.667); ORM2 (0.648)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:352513-352914:- | gene-YLR110C_AKU4011 | rna-NM_001181997.1_AKU4011 | cds-NP_013211.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:315961-316362:- | gene-YLR110C_BG1 | rna-NM_001181997.1_BG1 | cds-NP_013211.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:362052-362453:- | gene-YLR110C_Bruggeman | rna-NM_001181997.1_Bruggeman | cds-NP_013211.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:363567-363968:- | gene-YLR110C_CAT1 | rna-NM_001181997.1_CAT1 | cds-NP_013211.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:359656-360057:- | gene-YLR110C_CBS1585 | rna-NM_001181997.1_CBS1585 | cds-NP_013211.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:349907-350308:- | gene-YLR110C_CBS436 | rna-NM_001181997.1_CBS436 | cds-NP_013211.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:358074-358475:- | gene-YLR110C_CBS6412 | rna-NM_001181997.1_CBS6412 | cds-NP_013211.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:359921-360322:- | gene-YLR110C_CBS6413 | rna-NM_001181997.1_CBS6413 | cds-NP_013211.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:354717-355118:- | gene-YLR110C_CENPK1137D | rna-NM_001181997.1_CENPK1137D | cds-NP_013211.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:352077-352478:- | gene-YLR110C_EthanolRed | rna-NM_001181997.1_EthanolRed | cds-NP_013211.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:351558-351959:- | gene-YLR110C_FaliES1 | rna-NM_001181997.1_FaliES1 | cds-NP_013211.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:126509-126910:- | gene-YLR110C_JAY291 | rna-NM_001181997.1_JAY291 | cds-NP_013211.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:359429-359830:- | gene-YLR110C_MUCL30387 | rna-NM_001181997.1_MUCL30387 | cds-NP_013211.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:367094-367495:- | gene-YLR110C_MUCL30388 | rna-NM_001181997.1_MUCL30388 | cds-NP_013211.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:360165-360566:- | gene-YLR110C_MUCL39482 | rna-NM_001181997.1_MUCL39482 | cds-NP_013211.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:360290-360691:- | gene-YLR110C_MUCL42920 | rna-NM_001181997.1_MUCL42920 | cds-NP_013211.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:369671-370072:- | gene-YLR110C_NCIM3186 | rna-NM_001181997.1_NCIM3186 | cds-NP_013211.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:352438-352839:- | gene-YLR110C_NCYC1407 | rna-NM_001181997.1_NCYC1407 | cds-NP_013211.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:357672-358073:- | gene-YLR110C_PE2H3 | rna-NM_001181997.1_PE2H3 | cds-NP_013211.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:357413-357814:- | gene-YLR110C_PE2H4 | rna-NM_001181997.1_PE2H4 | cds-NP_013211.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:369697-370098:- | gene-YLR110C_S288C | rna-NM_001181997.1_S288C | cds-NP_013211.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000033.1:3988-4389:+ | gene-YLR110C_SA1 | rna-NM_001181997.1_SA1 | cds-NP_013211.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:352517-352918:- | gene-YLR110C_ThermosaccDry | rna-NM_001181997.1_ThermosaccDry | cds-NP_013211.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:365912-366313:- | gene-YLR110C_VR1 | rna-NM_001181997.1_VR1 | cds-NP_013211.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:351219-351620:- | gene-YLR110C_ZTW1 | rna-NM_001181997.1_ZTW1 | cds-NP_013211.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:359941-360345:- | gene-YLR110C_Sparadoxus | rna-NM_001181997.1_Sparadoxus | cds-NP_013211.1_Sparadoxus | 96.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |