Gene name: CCT6
Reference locus (S288C): YDR188W
Gene biotype: protein_coding
Description: T-complex protein 1 subunit zeta; Subunit of the cytosolic chaperonin Cct ring complex; related to Tcp1p, essential protein that is required for the assembly of actin and tubulins in vivo; contains an ATP-binding motif
Top 10 interactors (score): CCT5 (0.999); CCT8 (0.999); CCT7 (0.999); CCT4 (0.999); CCT3 (0.999); TCP1 (0.999); CCT2 (0.999); RPL3 (0.931); SSE1 (0.929); SSE2 (0.922); PRE6 (0.919); NOP56 (0.917); RPP0 (0.912); TEF4 (0.906); ASC1 (0.906); CAM1 (0.906); TOM40 (0.906); PLP2 (0.901); ARX1 (0.9); BRX1 (0.896)
Homologues (species, bitscore): CCT6A (Homo sapiens, 614.4); Cct6b (Mus musculus, 567.0); cct6a (Danio rerio, 605.9); cct6a (Xenopus tropicalis, 606.3); Tcp-1zeta (Drosophila melanogaster, 567.8); cct-6 (Caenorhabditis elegans, 574.7); AT3G02530 (Arabidopsis thaliana, 577.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:804953-806593:+ | gene-YDR188W_AKU4011 | rna-NM_001180496.3_AKU4011 | cds-NP_010474.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:319210-320850:- | gene-YDR188W_BG1 | rna-NM_001180496.3_BG1 | cds-NP_010474.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:837372-839012:+ | gene-YDR188W_Bruggeman | rna-NM_001180496.3_Bruggeman | cds-NP_010474.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:824618-826258:+ | gene-YDR188W_CAT1 | rna-NM_001180496.3_CAT1 | cds-NP_010474.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:795319-796959:+ | gene-YDR188W_CBS1585 | rna-NM_001180496.3_CBS1585 | cds-NP_010474.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:824300-825940:+ | gene-YDR188W_CBS436 | rna-NM_001180496.3_CBS436 | cds-NP_010474.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:792122-793762:+ | gene-YDR188W_CBS6412 | rna-NM_001180496.3_CBS6412 | cds-NP_010474.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:822666-824306:+ | gene-YDR188W_CBS6413 | rna-NM_001180496.3_CBS6413 | cds-NP_010474.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:835256-836896:+ | gene-YDR188W_CENPK1137D | rna-NM_001180496.3_CENPK1137D | cds-NP_010474.3_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:805711-807351:+ | gene-YDR188W_EthanolRed | rna-NM_001180496.3_EthanolRed | cds-NP_010474.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:813923-815563:+ | gene-YDR188W_FaliES1 | rna-NM_001180496.3_FaliES1 | cds-NP_010474.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000068.1:33794-35434:- | gene-YDR188W_JAY291 | rna-NM_001180496.3_JAY291 | cds-NP_010474.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:823017-824657:+ | gene-YDR188W_MUCL30387 | rna-NM_001180496.3_MUCL30387 | cds-NP_010474.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:811260-812900:+ | gene-YDR188W_MUCL30388 | rna-NM_001180496.3_MUCL30388 | cds-NP_010474.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:796766-798406:+ | gene-YDR188W_MUCL39482 | rna-NM_001180496.3_MUCL39482 | cds-NP_010474.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:735459-737099:+ | gene-YDR188W_MUCL42920 | rna-NM_001180496.3_MUCL42920 | cds-NP_010474.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:836344-837984:+ | gene-YDR188W_NCIM3186 | rna-NM_001180496.3_NCIM3186 | cds-NP_010474.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:799898-801538:+ | gene-YDR188W_NCYC1407 | rna-NM_001180496.3_NCYC1407 | cds-NP_010474.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:816648-818288:+ | gene-YDR188W_PE2H3 | rna-NM_001180496.3_PE2H3 | cds-NP_010474.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:815953-817593:+ | gene-YDR188W_PE2H4 | rna-NM_001180496.3_PE2H4 | cds-NP_010474.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:836421-838061:+ | gene-YDR188W_S288C | rna-NM_001180496.3_S288C | cds-NP_010474.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:182132-183772:+ | gene-YDR188W_SA1 | rna-NM_001180496.3_SA1 | cds-NP_010474.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:812078-813718:+ | gene-YDR188W_ThermosaccDry | rna-NM_001180496.3_ThermosaccDry | cds-NP_010474.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:827313-828953:+ | gene-YDR188W_VR1 | rna-NM_001180496.3_VR1 | cds-NP_010474.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:74798-76438:+ | gene-YDR188W_ZTW1 | rna-NM_001180496.3_ZTW1 | cds-NP_010474.3_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:817028-818668:+ | gene-YDR188W_Sparadoxus | rna-NM_001180496.3_Sparadoxus | cds-NP_010474.3_Sparadoxus | 90.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |