Gene name: CCT4
Reference locus (S288C): YDL143W
Gene biotype: protein_coding
Description: T-complex protein 1 subunit delta; Subunit of the cytosolic chaperonin Cct ring complex; related to Tcp1p, required for the assembly of actin and tubulins in vivo
Top 10 interactors (score): CCT8 (0.999); CCT7 (0.999); CCT5 (0.999); CCT3 (0.999); CCT6 (0.999); TCP1 (0.999); CCT2 (0.999); PRT1 (0.969); CDC55 (0.967); FAR8 (0.962); PLP2 (0.956); PRE10 (0.949); RPS2 (0.943); RPS1B (0.937); TCM62 (0.936); ACT1 (0.936); PRE5 (0.933); RPN1 (0.933); PUP2 (0.929); RPL3 (0.926)
Homologues (species, bitscore): CCT4 (Homo sapiens, 644.0); Cct4 (Mus musculus, 643.7); cct4 (Danio rerio, 645.6); cct4 (Xenopus tropicalis, 646.7); CG5525 (Drosophila melanogaster, 632.1); cct-4 (Caenorhabditis elegans, 622.1); AT3G18190 (Arabidopsis thaliana, 638.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:184412-185998:+ | gene-YDL143W_AKU4011 | rna-NM_001180203.1_AKU4011 | cds-NP_010138.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:363780-365366:- | gene-YDL143W_BG1 | rna-NM_001180203.1_BG1 | cds-NP_010138.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:200455-202041:+ | gene-YDL143W_Bruggeman | rna-NM_001180203.1_Bruggeman | cds-NP_010138.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:198777-200363:+ | gene-YDL143W_CAT1 | rna-NM_001180203.1_CAT1 | cds-NP_010138.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:182443-184029:+ | gene-YDL143W_CBS1585 | rna-NM_001180203.1_CBS1585 | cds-NP_010138.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:199381-200967:+ | gene-YDL143W_CBS436 | rna-NM_001180203.1_CBS436 | cds-NP_010138.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:181696-183282:+ | gene-YDL143W_CBS6412 | rna-NM_001180203.1_CBS6412 | cds-NP_010138.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:200881-202467:+ | gene-YDL143W_CBS6413 | rna-NM_001180203.1_CBS6413 | cds-NP_010138.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:198648-200234:+ | gene-YDL143W_CENPK1137D | rna-NM_001180203.1_CENPK1137D | cds-NP_010138.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:195651-197237:+ | gene-YDL143W_EthanolRed | rna-NM_001180203.1_EthanolRed | cds-NP_010138.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:201183-202769:+ | gene-YDL143W_FaliES1 | rna-NM_001180203.1_FaliES1 | cds-NP_010138.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000032.1:16781-18367:- | gene-YDL143W_JAY291 | rna-NM_001180203.1_JAY291 | cds-NP_010138.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:199569-201155:+ | gene-YDL143W_MUCL30387 | rna-NM_001180203.1_MUCL30387 | cds-NP_010138.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:190429-192015:+ | gene-YDL143W_MUCL30388 | rna-NM_001180203.1_MUCL30388 | cds-NP_010138.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:183598-185184:+ | gene-YDL143W_MUCL39482 | rna-NM_001180203.1_MUCL39482 | cds-NP_010138.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000205.1:16736-18322:- | gene-YDL143W_MUCL42920 | rna-NM_001180203.1_MUCL42920 | cds-NP_010138.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:199919-201505:+ | gene-YDL143W_NCIM3186 | rna-NM_001180203.1_NCIM3186 | cds-NP_010138.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:183532-185118:+ | gene-YDL143W_NCYC1407 | rna-NM_001180203.1_NCYC1407 | cds-NP_010138.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:190774-192360:+ | gene-YDL143W_PE2H3 | rna-NM_001180203.1_PE2H3 | cds-NP_010138.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:190778-192364:+ | gene-YDL143W_PE2H4 | rna-NM_001180203.1_PE2H4 | cds-NP_010138.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:199996-201582:+ | gene-YDL143W_S288C | rna-NM_001180203.1_S288C | cds-NP_010138.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000043.1:65552-67138:+ | gene-YDL143W_SA1 | rna-NM_001180203.1_SA1 | cds-NP_010138.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:200944-202530:+ | gene-YDL143W_ThermosaccDry | rna-NM_001180203.1_ThermosaccDry | cds-NP_010138.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:201538-203124:+ | gene-YDL143W_VR1 | rna-NM_001180203.1_VR1 | cds-NP_010138.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:199070-200656:+ | gene-YDL143W_ZTW1 | rna-NM_001180203.1_ZTW1 | cds-NP_010138.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:201190-202776:+ | gene-YDL143W_Sparadoxus | rna-NM_001180203.1_Sparadoxus | cds-NP_010138.1_Sparadoxus | 92.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |