Gene name: CCR4
Reference locus (S288C): YAL021C
Gene biotype: protein_coding
Description: Glucose-repressible alcohol dehydrogenase transcriptional effector; Component of the CCR4-NOT transcriptional complex; CCR4-NOT is involved in regulation of gene expression; component of the major cytoplasmic deadenylase, which is involved in mRNA poly(A) tail shortening; Belongs to the CCR4/nocturin family
Top 10 interactors (score): CDC39 (0.999); MOT2 (0.999); NOT3 (0.999); NOT5 (0.999); CAF40 (0.999); CDC36 (0.999); POP2 (0.999); PAN2 (0.994); CAF130 (0.994); DHH1 (0.992); PUF3 (0.982); CAF16 (0.98); PAB1 (0.978); PAN3 (0.971); XRN1 (0.969); MPT5 (0.963); CAF4 (0.961); EDC3 (0.955); LSM1 (0.953); BTT1 (0.933)
Homologues (species, bitscore): CNOT6 (Homo sapiens, 308.5); Cnot6l (Mus musculus, 301.6); cnot6 (Danio rerio, 297.0); cnot6l (Xenopus tropicalis, 299.3); twin (Drosophila melanogaster, 332.0); ccr-4 (Caenorhabditis elegans, 253.1); AT3G58560 (Arabidopsis thaliana, 193.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:95965-98472:- | gene-YAL021C_AKU4011 | rna-NM_001178166.1_AKU4011 | cds-NP_009381.1_AKU4011 | 99.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000070.1:82916-85420:- | gene-YAL021C_BG1 | rna-NM_001178166.1_BG1 | cds-NP_009381.1_BG1 | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:110836-113343:- | gene-YAL021C_Bruggeman | rna-NM_001178166.1_Bruggeman | cds-NP_009381.1_Bruggeman | 99.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:97173-99680:- | gene-YAL021C_CAT1 | rna-NM_001178166.1_CAT1 | cds-NP_009381.1_CAT1 | 99.1 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:108984-111491:- | gene-YAL021C_CBS1585 | rna-NM_001178166.1_CBS1585 | cds-NP_009381.1_CBS1585 | 99.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:109235-111760:- | gene-YAL021C_CBS436 | rna-NM_001178166.1_CBS436 | cds-NP_009381.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:722080-724578:- | gene-YAL021C_CBS6412 | rna-NM_001178166.1_CBS6412 | cds-NP_009381.1_CBS6412 | 98.6 | 99.4 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:107247-109754:- | gene-YAL021C_CBS6413 | rna-NM_001178166.1_CBS6413 | cds-NP_009381.1_CBS6413 | 99.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:110970-113517:- | gene-YAL021C_CENPK1137D | rna-NM_001178166.1_CENPK1137D | cds-NP_009381.1_CENPK1137D | 96.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:97386-99893:- | gene-YAL021C_EthanolRed | rna-NM_001178166.1_EthanolRed | cds-NP_009381.1_EthanolRed | 98.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:112010-114517:- | gene-YAL021C_FaliES1 | rna-NM_001178166.1_FaliES1 | cds-NP_009381.1_FaliES1 | 98.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000084.1:83284-85788:- | gene-YAL021C_JAY291 | rna-NM_001178166.1_JAY291 | cds-NP_009381.1_JAY291 | 99.3 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:111963-114470:- | gene-YAL021C_MUCL30387 | rna-NM_001178166.1_MUCL30387 | cds-NP_009381.1_MUCL30387 | 99.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:108485-110992:- | gene-YAL021C_MUCL30388 | rna-NM_001178166.1_MUCL30388 | cds-NP_009381.1_MUCL30388 | 99.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:107766-110273:- | gene-YAL021C_MUCL39482 | rna-NM_001178166.1_MUCL39482 | cds-NP_009381.1_MUCL39482 | 99.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:110145-112652:- | gene-YAL021C_MUCL42920 | rna-NM_001178166.1_MUCL42920 | cds-NP_009381.1_MUCL42920 | 98.9 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:110723-113236:- | gene-YAL021C_NCIM3186 | rna-NM_001178166.1_NCIM3186 | cds-NP_009381.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:95655-98162:- | gene-YAL021C_NCYC1407 | rna-NM_001178166.1_NCYC1407 | cds-NP_009381.1_NCYC1407 | 99.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:97569-100076:- | gene-YAL021C_PE2H3 | rna-NM_001178166.1_PE2H3 | cds-NP_009381.1_PE2H3 | 99.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:97288-99795:- | gene-YAL021C_PE2H4 | rna-NM_001178166.1_PE2H4 | cds-NP_009381.1_PE2H4 | 99.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:110846-113359:- | gene-YAL021C_S288C | rna-NM_001178166.1_S288C | cds-NP_009381.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000077.1:27712-30228:- | gene-YAL021C_SA1 | rna-NM_001178166.1_SA1 | cds-NP_009381.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:111523-114030:- | gene-YAL021C_ThermosaccDry | rna-NM_001178166.1_ThermosaccDry | cds-NP_009381.1_ThermosaccDry | 98.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:112816-115320:- | gene-YAL021C_VR1 | rna-NM_001178166.1_VR1 | cds-NP_009381.1_VR1 | 99.2 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:83334-85841:- | gene-YAL021C_ZTW1 | rna-NM_001178166.1_ZTW1 | cds-NP_009381.1_ZTW1 | 98.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:100900-103404:- | gene-YAL021C_Sparadoxus | rna-NM_001178166.1_Sparadoxus | cds-NP_009381.1_Sparadoxus | 92.0 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |