Gene name: CCM1
Reference locus (S288C): YGR150C
Gene biotype: protein_coding
Description: Mitochondrial group I intron splicing factor CCM1; Mitochondrial 15S rRNA-binding protein; required for intron removal of COB and COX1 pre-mRNAs; has separable roles in stabilizing mitochondrial 15S rRNA and in maturation of the COB and COX1 mRNAs; contains pentatricopeptide repeat (PPR) motifs; mutant is respiratory deficient and has defective plasma membrane electron transport
Top 10 interactors (score): MRPS5 (0.91); PET309 (0.873); BI4 (0.83); RPO41 (0.789); COX1 (0.785); BI2 (0.776); BI3 (0.762); RRG7 (0.749); RRG1 (0.748); RRG8 (0.747); RRG9 (0.747); GEP5 (0.746); AEP3 (0.746); YDR114C (0.745); GTF1 (0.716); COS6 (0.705); YNL184C (0.699); AI5_BETA (0.698); GEP7 (0.695); MGM101 (0.692)
Homologues (species, bitscore): ABO5 (Arabidopsis thaliana, 57.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:770163-772757:- | gene-YGR150C_AKU4011 | rna-NM_001181279.1_AKU4011 | cds-NP_011666.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:48079-50673:- | gene-YGR150C_BG1 | rna-NM_001181279.1_BG1 | cds-NP_011666.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:775633-778227:- | gene-YGR150C_Bruggeman | rna-NM_001181279.1_Bruggeman | cds-NP_011666.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:771586-774180:- | gene-YGR150C_CAT1 | rna-NM_001181279.1_CAT1 | cds-NP_011666.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:770897-773491:- | gene-YGR150C_CBS1585 | rna-NM_001181279.1_CBS1585 | cds-NP_011666.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:774547-777141:- | gene-YGR150C_CBS436 | rna-NM_001181279.1_CBS436 | cds-NP_011666.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:761917-764511:- | gene-YGR150C_CBS6412 | rna-NM_001181279.1_CBS6412 | cds-NP_011666.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:767755-770349:- | gene-YGR150C_CBS6413 | rna-NM_001181279.1_CBS6413 | cds-NP_011666.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:790192-792786:- | gene-YGR150C_CENPK1137D | rna-NM_001181279.1_CENPK1137D | cds-NP_011666.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:756466-759060:- | gene-YGR150C_EthanolRed | rna-NM_001181279.1_EthanolRed | cds-NP_011666.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:760554-763148:- | gene-YGR150C_FaliES1 | rna-NM_001181279.1_FaliES1 | cds-NP_011666.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000112.1:2837-5431:- | gene-YGR150C_JAY291 | rna-NM_001181279.1_JAY291 | cds-NP_011666.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:773375-775969:- | gene-YGR150C_MUCL30387 | rna-NM_001181279.1_MUCL30387 | cds-NP_011666.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:773067-775661:- | gene-YGR150C_MUCL30388 | rna-NM_001181279.1_MUCL30388 | cds-NP_011666.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:766373-768967:- | gene-YGR150C_MUCL39482 | rna-NM_001181279.1_MUCL39482 | cds-NP_011666.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:781316-783910:- | gene-YGR150C_MUCL42920 | rna-NM_001181279.1_MUCL42920 | cds-NP_011666.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:790459-793053:- | gene-YGR150C_NCIM3186 | rna-NM_001181279.1_NCIM3186 | cds-NP_011666.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:761573-764167:- | gene-YGR150C_NCYC1407 | rna-NM_001181279.1_NCYC1407 | cds-NP_011666.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:780540-783134:- | gene-YGR150C_PE2H3 | rna-NM_001181279.1_PE2H3 | cds-NP_011666.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:785650-788244:- | gene-YGR150C_PE2H4 | rna-NM_001181279.1_PE2H4 | cds-NP_011666.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:790459-793053:- | gene-YGR150C_S288C | rna-NM_001181279.1_S288C | cds-NP_011666.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000035.1:25467-28061:- | gene-YGR150C_SA1 | rna-NM_001181279.1_SA1 | cds-NP_011666.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:781177-783771:- | gene-YGR150C_ThermosaccDry | rna-NM_001181279.1_ThermosaccDry | cds-NP_011666.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:885447-888041:- | gene-YGR150C_VR1 | rna-NM_001181279.1_VR1 | cds-NP_011666.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:83025-85619:- | gene-YGR150C_ZTW1 | rna-NM_001181279.1_ZTW1 | cds-NP_011666.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:770488-773082:- | gene-YGR150C_Sparadoxus | rna-NM_001181279.1_Sparadoxus | cds-NP_011666.1_Sparadoxus | 87.0 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |