Gene name: CCL1
Reference locus (S288C): YPR025C
Gene biotype: protein_coding
Description: Cyclin associated with protein kinase Kin28p; Kin28p is the TFIIH-associated carboxy-terminal domain (CTD) kinase involved in transcription initiation at RNA polymerase II promoters; human homolog CCNH allows growth of yeast ccl1 temperature-sensitive mutant at restrictive temperature
Top 10 interactors (score): SSL1 (0.999); SSL2 (0.999); TFA2 (0.999); TFB4 (0.999); KIN28 (0.999); TFB3 (0.999); TFB1 (0.999); TFB5 (0.999); TFB2 (0.999); RAD3 (0.999); TFA1 (0.999); RPO21 (0.996); TFB6 (0.991); CDC28 (0.99); CTK2 (0.981); CTK1 (0.973); CLB1 (0.972); CLB2 (0.972); PHO85 (0.969); SSN3 (0.968)
Homologues (species, bitscore): CCNH (Homo sapiens, 111.7); Ccnh (Mus musculus, 112.5); ccnh (Danio rerio, 94.7); ccnh (Xenopus tropicalis, 91.7); CycH (Drosophila melanogaster, 101.7); cyh-1 (Caenorhabditis elegans, 72.4); CYCH;1 (Arabidopsis thaliana, 114.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:585016-586197:- | gene-YPR025C_AKU4011 | rna-NM_001184122.1_AKU4011 | cds-NP_015350.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:310953-312134:+ | gene-YPR025C_BG1 | rna-NM_001184122.1_BG1 | cds-NP_015350.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:662674-663855:- | gene-YPR025C_Bruggeman | rna-NM_001184122.1_Bruggeman | cds-NP_015350.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:706154-707335:- | gene-YPR025C_CAT1 | rna-NM_001184122.1_CAT1 | cds-NP_015350.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:588700-589881:- | gene-YPR025C_CBS1585 | rna-NM_001184122.1_CBS1585 | cds-NP_015350.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:603086-604267:- | gene-YPR025C_CBS436 | rna-NM_001184122.1_CBS436 | cds-NP_015350.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:592449-593630:- | gene-YPR025C_CBS6412 | rna-NM_001184122.1_CBS6412 | cds-NP_015350.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:585165-586346:- | gene-YPR025C_CBS6413 | rna-NM_001184122.1_CBS6413 | cds-NP_015350.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:613349-614534:- | gene-YPR025C_CENPK1137D | rna-NM_001184122.1_CENPK1137D | cds-NP_015350.1_CENPK1137D | 98.9 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:582948-584129:- | gene-YPR025C_EthanolRed | rna-NM_001184122.1_EthanolRed | cds-NP_015350.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:590750-591931:- | gene-YPR025C_FaliES1 | rna-NM_001184122.1_FaliES1 | cds-NP_015350.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000116.1:35489-36670:+ | gene-YPR025C_JAY291 | rna-NM_001184122.1_JAY291 | cds-NP_015350.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:603894-605075:- | gene-YPR025C_MUCL30387 | rna-NM_001184122.1_MUCL30387 | cds-NP_015350.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:602558-603739:- | gene-YPR025C_MUCL30388 | rna-NM_001184122.1_MUCL30388 | cds-NP_015350.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:581957-583138:- | gene-YPR025C_MUCL39482 | rna-NM_001184122.1_MUCL39482 | cds-NP_015350.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:643271-644452:- | gene-YPR025C_MUCL42920 | rna-NM_001184122.1_MUCL42920 | cds-NP_015350.1_MUCL42920 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:613360-614541:- | gene-YPR025C_NCIM3186 | rna-NM_001184122.1_NCIM3186 | cds-NP_015350.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:589889-591070:- | gene-YPR025C_NCYC1407 | rna-NM_001184122.1_NCYC1407 | cds-NP_015350.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:596604-597785:- | gene-YPR025C_PE2H3 | rna-NM_001184122.1_PE2H3 | cds-NP_015350.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:596252-597433:- | gene-YPR025C_PE2H4 | rna-NM_001184122.1_PE2H4 | cds-NP_015350.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:613377-614558:- | gene-YPR025C_S288C | rna-NM_001184122.1_S288C | cds-NP_015350.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000026.1:85741-86922:+ | gene-YPR025C_SA1 | rna-NM_001184122.1_SA1 | cds-NP_015350.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:590552-591733:- | gene-YPR025C_ThermosaccDry | rna-NM_001184122.1_ThermosaccDry | cds-NP_015350.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:606799-607980:- | gene-YPR025C_VR1 | rna-NM_001184122.1_VR1 | cds-NP_015350.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:589857-591038:- | gene-YPR025C_ZTW1 | rna-NM_001184122.1_ZTW1 | cds-NP_015350.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:590102-591280:- | gene-YPR025C_Sparadoxus | rna-NM_001184122.1_Sparadoxus | cds-NP_015350.1_Sparadoxus | 87.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |