Gene name: CCH1
Reference locus (S288C): YGR217W
Gene biotype: protein_coding
Description: Calcium-channel protein CCH1; Voltage-gated high-affinity calcium channel; involved in calcium influx in response to some environmental stresses as well as exposure to mating pheromones; interacts and partially co-localizes with Mid1p; however, evidence suggests CCH1 is not required for Mid1p function
Top 10 interactors (score): MID1 (0.999); CMD1 (0.997); PMC1 (0.983); MLC1 (0.975); MLC2 (0.975); CRZ1 (0.974); YVC1 (0.969); CNB1 (0.962); ECM7 (0.952); VCX1 (0.946); PMR1 (0.932); VNX1 (0.924); RHO1 (0.921); STE4 (0.901); TOK1 (0.83); CDC1 (0.817); GDT1 (0.815); SPF1 (0.809); CNA1 (0.785); ECM27 (0.765)
Homologues (species, bitscore): NALCN (Homo sapiens, 249.6); Nalcn (Mus musculus, 247.7); nalcn (Danio rerio, 240.4); nalcn (Xenopus tropicalis, 230.3); Na (Drosophila melanogaster, 232.6); unc-77 (Caenorhabditis elegans, 216.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:890216-896335:+ | gene-YGR217W_AKU4011 | rna-NM_001181346.3_AKU4011 | cds-NP_011733.3_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:170595-176714:+ | gene-YGR217W_BG1 | rna-NM_001181346.3_BG1 | cds-NP_011733.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:898410-904529:+ | gene-YGR217W_Bruggeman | rna-NM_001181346.3_Bruggeman | cds-NP_011733.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:896409-902529:+ | gene-YGR217W_CAT1 | rna-NM_001181346.3_CAT1 | cds-NP_011733.3_CAT1 | 99.1 | 99.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:893656-899775:+ | gene-YGR217W_CBS1585 | rna-NM_001181346.3_CBS1585 | cds-NP_011733.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:897003-903122:+ | gene-YGR217W_CBS436 | rna-NM_001181346.3_CBS436 | cds-NP_011733.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:884526-890645:+ | gene-YGR217W_CBS6412 | rna-NM_001181346.3_CBS6412 | cds-NP_011733.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:890585-896704:+ | gene-YGR217W_CBS6413 | rna-NM_001181346.3_CBS6413 | cds-NP_011733.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:924405-930524:+ | gene-YGR217W_CENPK1137D | rna-NM_001181346.3_CENPK1137D | cds-NP_011733.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:879036-885155:+ | gene-YGR217W_EthanolRed | rna-NM_001181346.3_EthanolRed | cds-NP_011733.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:883427-889546:+ | gene-YGR217W_FaliES1 | rna-NM_001181346.3_FaliES1 | cds-NP_011733.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000282.1:3086-9205:+ | gene-YGR217W_JAY291 | rna-NM_001181346.3_JAY291 | cds-NP_011733.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:895895-902014:+ | gene-YGR217W_MUCL30387 | rna-NM_001181346.3_MUCL30387 | cds-NP_011733.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:895581-901700:+ | gene-YGR217W_MUCL30388 | rna-NM_001181346.3_MUCL30388 | cds-NP_011733.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:888732-894851:+ | gene-YGR217W_MUCL39482 | rna-NM_001181346.3_MUCL39482 | cds-NP_011733.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:906273-912392:+ | gene-YGR217W_MUCL42920 | rna-NM_001181346.3_MUCL42920 | cds-NP_011733.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:924696-930815:+ | gene-YGR217W_NCIM3186 | rna-NM_001181346.3_NCIM3186 | cds-NP_011733.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:884388-890507:+ | gene-YGR217W_NCYC1407 | rna-NM_001181346.3_NCYC1407 | cds-NP_011733.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:908990-915109:+ | gene-YGR217W_PE2H3 | rna-NM_001181346.3_PE2H3 | cds-NP_011733.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:914100-920219:+ | gene-YGR217W_PE2H4 | rna-NM_001181346.3_PE2H4 | cds-NP_011733.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:924696-930815:+ | gene-YGR217W_S288C | rna-NM_001181346.3_S288C | cds-NP_011733.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000045.1:70576-76695:- | gene-YGR217W_SA1 | rna-NM_001181346.3_SA1 | cds-NP_011733.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:903938-910057:+ | gene-YGR217W_ThermosaccDry | rna-NM_001181346.3_ThermosaccDry | cds-NP_011733.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:1008418-1014537:+ | gene-YGR217W_VR1 | rna-NM_001181346.3_VR1 | cds-NP_011733.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:205379-211497:+ | gene-YGR217W_ZTW1 | rna-NM_001181346.3_ZTW1 | cds-NP_011733.3_ZTW1 | 99.5 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:895868-901996:+ | gene-YGR217W_Sparadoxus | rna-NM_001181346.3_Sparadoxus | cds-NP_011733.3_Sparadoxus | 90.2 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |