Gene name: CCE1
Reference locus (S288C): YKL011C
Gene biotype: protein_coding
Description: Mitochondrial cruciform cutting endonuclease; cleaves Holliday junctions formed during recombination of mitochondrial DNA; CCE1 has a paralog, MRS1, that arose from the whole genome duplication
Top 10 interactors (score): MHR1 (0.924); ABF2 (0.84); MSH1 (0.813); ORI5 (0.779); MGM101 (0.761); PIF1 (0.745); MUS81 (0.701); DIN7 (0.67); RPO41 (0.649); RAD2 (0.623); NTG1 (0.623); IRC3 (0.57); HMI1 (0.57); YEN1 (0.55); PSO2 (0.536); REX2 (0.531); MIP1 (0.528); RAD27 (0.512); YOR282W (0.483); OGG1 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:406173-407234:- | gene-YKL011C_AKU4011 | rna-NM_001179577.1_AKU4011 | cds-NP_012914.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:236669-237730:+ | gene-YKL011C_BG1 | rna-NM_001179577.1_BG1 | cds-NP_012914.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:427878-428939:- | gene-YKL011C_Bruggeman | rna-NM_001179577.1_Bruggeman | cds-NP_012914.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:422985-424046:- | gene-YKL011C_CAT1 | rna-NM_001179577.1_CAT1 | cds-NP_012914.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:418893-419954:- | gene-YKL011C_CBS1585 | rna-NM_001179577.1_CBS1585 | cds-NP_012914.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:417756-418817:- | gene-YKL011C_CBS436 | rna-NM_001179577.1_CBS436 | cds-NP_012914.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:403049-404110:- | gene-YKL011C_CBS6412 | rna-NM_001179577.1_CBS6412 | cds-NP_012914.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:418748-419809:- | gene-YKL011C_CBS6413 | rna-NM_001179577.1_CBS6413 | cds-NP_012914.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:419832-420893:- | gene-YKL011C_CENPK1137D | rna-NM_001179577.1_CENPK1137D | cds-NP_012914.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:416670-417731:- | gene-YKL011C_EthanolRed | rna-NM_001179577.1_EthanolRed | cds-NP_012914.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:418760-419821:- | gene-YKL011C_FaliES1 | rna-NM_001179577.1_FaliES1 | cds-NP_012914.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000142.1:11230-12291:+ | gene-YKL011C_JAY291 | rna-NM_001179577.1_JAY291 | cds-NP_012914.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:427193-428254:- | gene-YKL011C_MUCL30387 | rna-NM_001179577.1_MUCL30387 | cds-NP_012914.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:422802-423863:- | gene-YKL011C_MUCL30388 | rna-NM_001179577.1_MUCL30388 | cds-NP_012914.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:418210-419271:- | gene-YKL011C_MUCL39482 | rna-NM_001179577.1_MUCL39482 | cds-NP_012914.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:424039-425100:- | gene-YKL011C_MUCL42920 | rna-NM_001179577.1_MUCL42920 | cds-NP_012914.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:420144-421205:- | gene-YKL011C_NCIM3186 | rna-NM_001179577.1_NCIM3186 | cds-NP_012914.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:418402-419463:- | gene-YKL011C_NCYC1407 | rna-NM_001179577.1_NCYC1407 | cds-NP_012914.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:443093-444154:- | gene-YKL011C_PE2H3 | rna-NM_001179577.1_PE2H3 | cds-NP_012914.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:427835-428896:- | gene-YKL011C_PE2H4 | rna-NM_001179577.1_PE2H4 | cds-NP_012914.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:420155-421216:- | gene-YKL011C_S288C | rna-NM_001179577.1_S288C | cds-NP_012914.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:98437-99498:- | gene-YKL011C_SA1 | rna-NM_001179577.1_SA1 | cds-NP_012914.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:418859-419920:- | gene-YKL011C_ThermosaccDry | rna-NM_001179577.1_ThermosaccDry | cds-NP_012914.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:418115-419176:- | gene-YKL011C_VR1 | rna-NM_001179577.1_VR1 | cds-NP_012914.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:416887-417948:- | gene-YKL011C_ZTW1 | rna-NM_001179577.1_ZTW1 | cds-NP_012914.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:441861-442922:- | gene-YKL011C_Sparadoxus | rna-NM_001179577.1_Sparadoxus | cds-NP_012914.1_Sparadoxus | 86.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |