Gene name: CCA1
Reference locus (S288C): YER168C
Gene biotype: protein_coding
Description: CCA tRNA nucleotidyltransferase, mitochondrial; ATP (CTP):tRNA-specific tRNA nucleotidyltransferase; different forms targeted to the nucleus, cytosol, and mitochondrion are generated via the use of multiple transcriptional and translational start sites; human homolog TRNT1 complements yeast null mutant
Top 10 interactors (score): TRZ1 (0.921); THG1 (0.875); LOS1 (0.874); RRP15 (0.833); TRM1 (0.829); MES1 (0.748); SES1 (0.746); TRM7 (0.745); YDR341C (0.744); LHP1 (0.718); ZDS2 (0.717); GAL80 (0.7); HTS1 (0.695); CDC60 (0.693); PET309 (0.689); NAM2 (0.688); PDR10 (0.662); CEX1 (0.65); CYT1 (0.634); GLN4 (0.628)
Homologues (species, bitscore): TRNT1 (Homo sapiens, 70.9); Trnt1 (Mus musculus, 65.1); trnt1 (Danio rerio, 64.3); trnt1 (Xenopus tropicalis, 70.1); CG2100 (Drosophila melanogaster, 55.5); hpo-31 (Caenorhabditis elegans, 55.1); AT1G22660 (Arabidopsis thaliana, 251.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:502548-504188:- | gene-YER168C_AKU4011 | rna-NM_001179058.1_AKU4011 | cds-NP_011095.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000176.1:29174-30814:+ | gene-YER168C_BG1 | rna-NM_001179058.1_BG1 | cds-NP_011095.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:515287-516927:- | gene-YER168C_Bruggeman | rna-NM_001179058.1_Bruggeman | cds-NP_011095.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:501882-503522:- | gene-YER168C_CAT1 | rna-NM_001179058.1_CAT1 | cds-NP_011095.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:502355-503995:- | gene-YER168C_CBS1585 | rna-NM_001179058.1_CBS1585 | cds-NP_011095.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:512251-513891:- | gene-YER168C_CBS436 | rna-NM_001179058.1_CBS436 | cds-NP_011095.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:500332-501972:- | gene-YER168C_CBS6412 | rna-NM_001179058.1_CBS6412 | cds-NP_011095.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:508901-510541:- | gene-YER168C_CBS6413 | rna-NM_001179058.1_CBS6413 | cds-NP_011095.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:518800-520440:- | gene-YER168C_CENPK1137D | rna-NM_001179058.1_CENPK1137D | cds-NP_011095.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:508521-510161:- | gene-YER168C_EthanolRed | rna-NM_001179058.1_EthanolRed | cds-NP_011095.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:509457-511097:- | gene-YER168C_FaliES1 | rna-NM_001179058.1_FaliES1 | cds-NP_011095.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000169.1:28808-30448:+ | gene-YER168C_JAY291 | rna-NM_001179058.1_JAY291 | cds-NP_011095.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:502606-504246:- | gene-YER168C_MUCL30387 | rna-NM_001179058.1_MUCL30387 | cds-NP_011095.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:505521-507161:- | gene-YER168C_MUCL30388 | rna-NM_001179058.1_MUCL30388 | cds-NP_011095.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:498313-499953:- | gene-YER168C_MUCL39482 | rna-NM_001179058.1_MUCL39482 | cds-NP_011095.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:512837-514477:- | gene-YER168C_MUCL42920 | rna-NM_001179058.1_MUCL42920 | cds-NP_011095.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:521028-522668:- | gene-YER168C_NCIM3186 | rna-NM_001179058.1_NCIM3186 | cds-NP_011095.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:507769-509409:- | gene-YER168C_NCYC1407 | rna-NM_001179058.1_NCYC1407 | cds-NP_011095.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:523701-525341:- | gene-YER168C_PE2H3 | rna-NM_001179058.1_PE2H3 | cds-NP_011095.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:513642-515282:- | gene-YER168C_PE2H4 | rna-NM_001179058.1_PE2H4 | cds-NP_011095.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:521029-522669:- | gene-YER168C_S288C | rna-NM_001179058.1_S288C | cds-NP_011095.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000030.1:73180-74820:- | gene-YER168C_SA1 | rna-NM_001179058.1_SA1 | cds-NP_011095.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:510257-511897:- | gene-YER168C_ThermosaccDry | rna-NM_001179058.1_ThermosaccDry | cds-NP_011095.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:503547-505187:- | gene-YER168C_VR1 | rna-NM_001179058.1_VR1 | cds-NP_011095.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000011.1:23108-24748:- | gene-YER168C_ZTW1 | rna-NM_001179058.1_ZTW1 | cds-NP_011095.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:511475-513115:- | gene-YER168C_Sparadoxus | rna-NM_001179058.1_Sparadoxus | cds-NP_011095.1_Sparadoxus | 90.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |