CBR1 (YIL043C)


Gene profile

Gene name: CBR1
Reference locus (S288C): YIL043C
Gene biotype: protein_coding

Description: NADH-cytochrome b5 reductase 1; Cytochrome b reductase; not essential for viability; also detected in mitochondria; mutation in conserved NADH binding domain of the human ortholog results in type I methemoglobinemia

Top 10 interactors (score): NCP1 (0.926); CYB5 (0.8); STE20 (0.708); NIT3 (0.704); YMR122W-A (0.666); PTH2 (0.655); OLE1 (0.653); YFL051C (0.651); LYS2 (0.649); ERG11 (0.629); URA1 (0.624); CYB2 (0.607); TPC1 (0.605); AIF1 (0.576); FMP42 (0.573); BOL1 (0.569); YGR021W (0.565); SCS7 (0.564); YJR061W (0.561); KTI11 (0.553)

Homologues (species, bitscore): CYB5R2 (Homo sapiens, 184.5); Cyb5r1 (Mus musculus, 186.8); cyb5r2 (Danio rerio, 178.3); cyb5r2 (Xenopus tropicalis, 203.8); CG5946 (Drosophila melanogaster, 165.6); T05H4.4 (Caenorhabditis elegans, 184.1); CBR (Arabidopsis thaliana, 217.2)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005303.1:270900-271754:- gene-YIL043C_AKU4011 rna-NM_001179393.1_AKU4011 cds-NP_012221.2_AKU4011 99.2 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000164.1:132337-133191:- gene-YIL043C_BG1 rna-NM_001179393.1_BG1 cds-NP_012221.2_BG1 99.5 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005511.1:277169-278023:- gene-YIL043C_Bruggeman rna-NM_001179393.1_Bruggeman cds-NP_012221.2_Bruggeman 99.5 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005527.1:265071-265925:- gene-YIL043C_CAT1 rna-NM_001179393.1_CAT1 cds-NP_012221.2_CAT1 99.5 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005367.1:270725-271579:- gene-YIL043C_CBS1585 rna-NM_001179393.1_CBS1585 cds-NP_012221.2_CBS1585 99.2 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005351.1:266045-266899:- gene-YIL043C_CBS436 rna-NM_001179393.1_CBS436 cds-NP_012221.2_CBS436 99.5 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005335.1:267340-268194:- gene-YIL043C_CBS6412 rna-NM_001179393.1_CBS6412 cds-NP_012221.2_CBS6412 99.2 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005319.1:262891-263745:- gene-YIL043C_CBS6413 rna-NM_001179393.1_CBS6413 cds-NP_012221.2_CBS6413 99.2 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001530.1:265985-266839:- gene-YIL043C_CENPK1137D rna-NM_001179393.1_CENPK1137D cds-NP_012221.2_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005479.1:254814-255668:- gene-YIL043C_EthanolRed rna-NM_001179393.1_EthanolRed cds-NP_012221.2_EthanolRed 99.4 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005543.1:272353-273207:- gene-YIL043C_FaliES1 rna-NM_001179393.1_FaliES1 cds-NP_012221.2_FaliES1 99.4 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000365.1:25663-26517:+ gene-YIL043C_JAY291 rna-NM_001179393.1_JAY291 cds-NP_012221.2_JAY291 99.5 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005415.1:274017-274871:- gene-YIL043C_MUCL30387 rna-NM_001179393.1_MUCL30387 cds-NP_012221.2_MUCL30387 99.5 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005447.1:270620-271474:- gene-YIL043C_MUCL30388 rna-NM_001179393.1_MUCL30388 cds-NP_012221.2_MUCL30388 99.5 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005287.1:271568-272422:- gene-YIL043C_MUCL39482 rna-NM_001179393.1_MUCL39482 cds-NP_012221.2_MUCL39482 99.2 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005431.1:274712-275566:- gene-YIL043C_MUCL42920 rna-NM_001179393.1_MUCL42920 cds-NP_012221.2_MUCL42920 99.6 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011818.1:274072-274926:- gene-YIL043C_NCIM3186 rna-NM_001179393.1_NCIM3186 cds-NP_012221.2_NCIM3186 99.2 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005271.1:275841-276695:- gene-YIL043C_NCYC1407 rna-NM_001179393.1_NCYC1407 cds-NP_012221.2_NCYC1407 99.1 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994148.1:269099-269953:- gene-YIL043C_PE2H3 rna-NM_001179393.1_PE2H3 cds-NP_012221.2_PE2H3 99.6 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999880.1:263805-264659:- gene-YIL043C_PE2H4 rna-NM_001179393.1_PE2H4 cds-NP_012221.2_PE2H4 99.5 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001141.2:274072-274926:- gene-YIL043C_S288C rna-NM_001179393.1_S288C cds-NP_012221.2_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000031.1:51234-52088:+ gene-YIL043C_SA1 rna-NM_001179393.1_SA1 cds-NP_012221.2_SA1 99.6 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005495.1:271022-271876:- gene-YIL043C_ThermosaccDry rna-NM_001179393.1_ThermosaccDry cds-NP_012221.2_ThermosaccDry 99.4 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005463.1:268207-269061:- gene-YIL043C_VR1 rna-NM_001179393.1_VR1 cds-NP_012221.2_VR1 99.6 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000019.1:244876-245730:- gene-YIL043C_ZTW1 rna-NM_001179393.1_ZTW1 cds-NP_012221.2_ZTW1 99.2 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047495.1:266962-267816:- gene-YIL043C_Sparadoxus rna-NM_001179393.1_Sparadoxus cds-NP_012221.2_Sparadoxus 93.3 100.0 Verified 1 1 1 False True False False False

Additional files