Gene name: CBP3
Reference locus (S288C): YPL215W
Gene biotype: protein_coding
Description: Mitochondrial protein required for assembly of cytochrome bc1 complex; forms a complex with Cbp6p that binds to mt ribosomes near the polypeptide tunnel exit and promotes efficient translation of the COB mRNA; Cbp3p-Cbp6p complex also interacts with newly synthesized cytochrome b (Cobp) and Cbp4p to promote assembly of Cobp into the cytochrome bc1 complex; Cbp3p-Cbp6p complex is sequestered if assembly of Complex III is blocked, downregulating COB mRNA translation
Top 10 interactors (score): CBP6 (0.987); CBP4 (0.986); COB (0.978); BCS1 (0.969); QCR8 (0.963); QCR7 (0.96); QCR6 (0.957); QCR2 (0.954); QCR9 (0.953); COR1 (0.949); CYT1 (0.941); MRP20 (0.932); MSS51 (0.884); QCR10 (0.858); CYC1 (0.852); OLI1 (0.848); CBS2 (0.816); MRPL4 (0.811); PET309 (0.795); RIP1 (0.786)
Homologues (species, bitscore): UQCC1 (Homo sapiens, 76.3); Uqcc1 (Mus musculus, 75.9); uqcc1 (Danio rerio, 81.3); uqcc (Xenopus tropicalis, 75.9); CG10075 (Drosophila melanogaster, 79.3); C35D10.5 (Caenorhabditis elegans, 62.4); AT5G51220 (Arabidopsis thaliana, 50.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:125288-126295:+ | gene-YPL215W_AKU4011 | rna-NM_001184029.1_AKU4011 | cds-NP_015109.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:331059-332066:+ | gene-YPL215W_BG1 | rna-NM_001184029.1_BG1 | cds-NP_015109.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:150753-151760:+ | gene-YPL215W_Bruggeman | rna-NM_001184029.1_Bruggeman | cds-NP_015109.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:147361-148368:+ | gene-YPL215W_CAT1 | rna-NM_001184029.1_CAT1 | cds-NP_015109.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:129474-130481:+ | gene-YPL215W_CBS1585 | rna-NM_001184029.1_CBS1585 | cds-NP_015109.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:143897-144904:+ | gene-YPL215W_CBS436 | rna-NM_001184029.1_CBS436 | cds-NP_015109.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:134277-135284:+ | gene-YPL215W_CBS6412 | rna-NM_001184029.1_CBS6412 | cds-NP_015109.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:125651-126658:+ | gene-YPL215W_CBS6413 | rna-NM_001184029.1_CBS6413 | cds-NP_015109.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:147353-148360:+ | gene-YPL215W_CENPK1137D | rna-NM_001184029.1_CENPK1137D | cds-NP_015109.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:124387-125394:+ | gene-YPL215W_EthanolRed | rna-NM_001184029.1_EthanolRed | cds-NP_015109.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:131593-132600:+ | gene-YPL215W_FaliES1 | rna-NM_001184029.1_FaliES1 | cds-NP_015109.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000069.1:25708-26715:- | gene-YPL215W_JAY291 | rna-NM_001184029.1_JAY291 | cds-NP_015109.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:142462-143469:+ | gene-YPL215W_MUCL30387 | rna-NM_001184029.1_MUCL30387 | cds-NP_015109.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:140653-141660:+ | gene-YPL215W_MUCL30388 | rna-NM_001184029.1_MUCL30388 | cds-NP_015109.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:122604-123611:+ | gene-YPL215W_MUCL39482 | rna-NM_001184029.1_MUCL39482 | cds-NP_015109.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:141487-142494:+ | gene-YPL215W_MUCL42920 | rna-NM_001184029.1_MUCL42920 | cds-NP_015109.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:147399-148406:+ | gene-YPL215W_NCIM3186 | rna-NM_001184029.1_NCIM3186 | cds-NP_015109.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:129052-130059:+ | gene-YPL215W_NCYC1407 | rna-NM_001184029.1_NCYC1407 | cds-NP_015109.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:136759-137766:+ | gene-YPL215W_PE2H3 | rna-NM_001184029.1_PE2H3 | cds-NP_015109.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:136402-137409:+ | gene-YPL215W_PE2H4 | rna-NM_001184029.1_PE2H4 | cds-NP_015109.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:147416-148423:+ | gene-YPL215W_S288C | rna-NM_001184029.1_S288C | cds-NP_015109.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000095.1:25758-26765:- | gene-YPL215W_SA1 | rna-NM_001184029.1_SA1 | cds-NP_015109.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:131374-132381:+ | gene-YPL215W_ThermosaccDry | rna-NM_001184029.1_ThermosaccDry | cds-NP_015109.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:145440-146447:+ | gene-YPL215W_VR1 | rna-NM_001184029.1_VR1 | cds-NP_015109.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:130903-131911:+ | gene-YPL215W_ZTW1 | rna-NM_001184029.1_ZTW1 | cds-NP_015109.1_ZTW1 | 99.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:132484-133491:+ | gene-YPL215W_Sparadoxus | rna-NM_001184029.1_Sparadoxus | cds-NP_015109.1_Sparadoxus | 90.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |