Gene name: CBP2
Reference locus (S288C): YHL038C
Gene biotype: protein_coding
Description: Cytochrome B pre-mRNA-processing protein 2; Required for splicing of the group I intron bI5 of the COB pre-mRNA; nuclear-encoded mitochondrial protein that binds to the RNA to promote splicing; also involved in but not essential for splicing of the COB bI2 intron and the intron in the 21S rRNA gene
Top 10 interactors (score): CBT1 (0.802); CBP1 (0.78); CBS2 (0.78); BI3 (0.78); CBS1 (0.78); BI2 (0.78); MSS116 (0.753); BCS1 (0.746); MSY1 (0.717); MRS1 (0.711); AI5_BETA (0.699); PET54 (0.698); JIP5 (0.694); PET117 (0.673); OSW7 (0.67); SHY1 (0.651); MNE1 (0.613); MRX1 (0.613); MSD1 (0.611); COX1 (0.61)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:18472-20364:- | gene-YHL038C_AKU4011 | rna-NM_001179118.1_AKU4011 | cds-NP_011825.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000180.1:56460-58352:+ | gene-YHL038C_BG1 | rna-NM_001179118.1_BG1 | cds-NP_011825.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:25136-27028:- | gene-YHL038C_Bruggeman | rna-NM_001179118.1_Bruggeman | cds-NP_011825.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:19391-21283:- | gene-YHL038C_CAT1 | rna-NM_001179118.1_CAT1 | cds-NP_011825.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:19075-20967:- | gene-YHL038C_CBS1585 | rna-NM_001179118.1_CBS1585 | cds-NP_011825.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:11661-13553:- | gene-YHL038C_CBS436 | rna-NM_001179118.1_CBS436 | cds-NP_011825.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:19024-20916:- | gene-YHL038C_CBS6412 | rna-NM_001179118.1_CBS6412 | cds-NP_011825.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:18490-20382:- | gene-YHL038C_CBS6413 | rna-NM_001179118.1_CBS6413 | cds-NP_011825.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:16782-18674:- | gene-YHL038C_CENPK1137D | rna-NM_001179118.1_CENPK1137D | cds-NP_011825.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:18702-20594:- | gene-YHL038C_EthanolRed | rna-NM_001179118.1_EthanolRed | cds-NP_011825.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:19026-20918:- | gene-YHL038C_FaliES1 | rna-NM_001179118.1_FaliES1 | cds-NP_011825.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000157.1:10980-12872:- | gene-YHL038C_JAY291 | rna-NM_001179118.1_JAY291 | cds-NP_011825.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:20970-22862:- | gene-YHL038C_MUCL30387 | rna-NM_001179118.1_MUCL30387 | cds-NP_011825.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:22807-24699:- | gene-YHL038C_MUCL30388 | rna-NM_001179118.1_MUCL30388 | cds-NP_011825.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:18066-19958:- | gene-YHL038C_MUCL39482 | rna-NM_001179118.1_MUCL39482 | cds-NP_011825.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:22037-23929:- | gene-YHL038C_MUCL42920 | rna-NM_001179118.1_MUCL42920 | cds-NP_011825.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:23499-25391:- | gene-YHL038C_NCIM3186 | rna-NM_001179118.1_NCIM3186 | cds-NP_011825.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:17552-19444:- | gene-YHL038C_NCYC1407 | rna-NM_001179118.1_NCYC1407 | cds-NP_011825.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:13843-15735:- | gene-YHL038C_PE2H3 | rna-NM_001179118.1_PE2H3 | cds-NP_011825.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:21219-23111:- | gene-YHL038C_PE2H4 | rna-NM_001179118.1_PE2H4 | cds-NP_011825.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:23617-25509:- | gene-YHL038C_S288C | rna-NM_001179118.1_S288C | cds-NP_011825.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:7910-9802:- | gene-YHL038C_SA1 | rna-NM_001179118.1_SA1 | cds-NP_011825.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:20115-22007:- | gene-YHL038C_ThermosaccDry | rna-NM_001179118.1_ThermosaccDry | cds-NP_011825.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:24825-26717:- | gene-YHL038C_VR1 | rna-NM_001179118.1_VR1 | cds-NP_011825.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:11330-13222:- | gene-YHL038C_ZTW1 | rna-NM_001179118.1_ZTW1 | cds-NP_011825.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:17667-19559:- | gene-YHL038C_Sparadoxus | rna-NM_001179118.1_Sparadoxus | cds-NP_011825.1_Sparadoxus | 85.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |