Gene name: CBF5
Reference locus (S288C): YLR175W
Gene biotype: protein_coding
Description: H/ACA ribonucleoprotein complex subunit 4; Pseudouridine synthase catalytic subunit of box H/ACA snoRNPs; acts on large and small rRNAs, on snRNA U2, and on some mRNAs; mutations in human ortholog dyskerin cause the disorder dyskeratosis congenita; small nucleolar ribonucleoprotein particles are also known as snoRNPs
Top 10 interactors (score): NHP2 (0.999); NOP58 (0.999); NOP1 (0.999); GAR1 (0.999); TSR1 (0.999); HAS1 (0.999); RRP12 (0.999); RPF2 (0.999); UTP13 (0.999); YTM1 (0.999); CIC1 (0.999); NOP10 (0.999); SNU13 (0.999); KRE33 (0.999); UTP21 (0.999); SHQ1 (0.999); KRR1 (0.999); NOC2 (0.999); BMS1 (0.999); RRP5 (0.999)
Homologues (species, bitscore): DKC1 (Homo sapiens, 620.5); Dkc1 (Mus musculus, 626.3); dkc1 (Danio rerio, 625.5); DKC1 (Xenopus tropicalis, 632.9); Nop60B (Drosophila melanogaster, 608.6); K01G5.5 (Caenorhabditis elegans, 572.0); NAP57 (Arabidopsis thaliana, 641.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:460237-461697:+ | gene-YLR175W_AKU4011 | rna-NM_001182062.1_AKU4011 | cds-NP_013276.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:17468-18928:+ | gene-YLR175W_BG1 | rna-NM_001182062.1_BG1 | cds-NP_013276.1_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:500580-502040:+ | gene-YLR175W_Bruggeman | rna-NM_001182062.1_Bruggeman | cds-NP_013276.1_Bruggeman | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:500111-501571:+ | gene-YLR175W_CAT1 | rna-NM_001182062.1_CAT1 | cds-NP_013276.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:495734-497194:+ | gene-YLR175W_CBS1585 | rna-NM_001182062.1_CBS1585 | cds-NP_013276.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:485876-487336:+ | gene-YLR175W_CBS436 | rna-NM_001182062.1_CBS436 | cds-NP_013276.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:464305-465765:+ | gene-YLR175W_CBS6412 | rna-NM_001182062.1_CBS6412 | cds-NP_013276.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:496040-497500:+ | gene-YLR175W_CBS6413 | rna-NM_001182062.1_CBS6413 | cds-NP_013276.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:490854-492314:+ | gene-YLR175W_CENPK1137D | rna-NM_001182062.1_CENPK1137D | cds-NP_013276.1_CENPK1137D | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:459758-461218:+ | gene-YLR175W_EthanolRed | rna-NM_001182062.1_EthanolRed | cds-NP_013276.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:488685-490145:+ | gene-YLR175W_FaliES1 | rna-NM_001182062.1_FaliES1 | cds-NP_013276.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000004.1:15621-17081:+ | gene-YLR175W_JAY291 | rna-NM_001182062.1_JAY291 | cds-NP_013276.1_JAY291 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:500601-502061:+ | gene-YLR175W_MUCL30387 | rna-NM_001182062.1_MUCL30387 | cds-NP_013276.1_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:505533-506993:+ | gene-YLR175W_MUCL30388 | rna-NM_001182062.1_MUCL30388 | cds-NP_013276.1_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:496731-498191:+ | gene-YLR175W_MUCL39482 | rna-NM_001182062.1_MUCL39482 | cds-NP_013276.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:497305-498765:+ | gene-YLR175W_MUCL42920 | rna-NM_001182062.1_MUCL42920 | cds-NP_013276.1_MUCL42920 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:506108-507559:+ | gene-YLR175W_NCIM3186 | rna-NM_001182062.1_NCIM3186 | cds-NP_013276.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:489155-490615:+ | gene-YLR175W_NCYC1407 | rna-NM_001182062.1_NCYC1407 | cds-NP_013276.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:493408-494868:+ | gene-YLR175W_PE2H3 | rna-NM_001182062.1_PE2H3 | cds-NP_013276.1_PE2H3 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:493152-494612:+ | gene-YLR175W_PE2H4 | rna-NM_001182062.1_PE2H4 | cds-NP_013276.1_PE2H4 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:506134-507585:+ | gene-YLR175W_S288C | rna-NM_001182062.1_S288C | cds-NP_013276.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:15679-17139:+ | gene-YLR175W_SA1 | rna-NM_001182062.1_SA1 | cds-NP_013276.1_SA1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:491209-492669:+ | gene-YLR175W_ThermosaccDry | rna-NM_001182062.1_ThermosaccDry | cds-NP_013276.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:502521-503981:+ | gene-YLR175W_VR1 | rna-NM_001182062.1_VR1 | cds-NP_013276.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:15578-17038:+ | gene-YLR175W_ZTW1 | rna-NM_001182062.1_ZTW1 | cds-NP_013276.1_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:477258-478724:+ | gene-YLR175W_Sparadoxus | rna-NM_001182062.1_Sparadoxus | cds-NP_013276.1_Sparadoxus | 94.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |