Gene name: CBC2
Reference locus (S288C): YPL178W
Gene biotype: protein_coding
Description: Nuclear cap-binding protein subunit 2; Small subunit of the heterodimeric cap binding complex with Sto1p; interacts with Npl3p, possibly to package mRNA for export from the nucleus; may have a role in telomere maintenance; contains an RNA-binding motif; Belongs to the RRM NCBP2 family
Top 10 interactors (score): SNP1 (0.999); STO1 (0.999); NAM8 (0.998); SMD3 (0.998); SNU56 (0.998); MUD2 (0.997); MEX67 (0.996); SMD1 (0.995); YHC1 (0.995); LUC7 (0.994); SMB1 (0.993); YRA1 (0.993); PRP42 (0.992); SMD2 (0.991); PRP39 (0.99); TIF4632 (0.99); CDC33 (0.989); PAB1 (0.989); MUD1 (0.988); SME1 (0.987)
Homologues (species, bitscore): NCBP2 (Homo sapiens, 156.8); Ncbp2 (Mus musculus, 156.4); ncbp2 (Danio rerio, 152.5); ncbp2 (Xenopus tropicalis, 148.3); Cbp20 (Drosophila melanogaster, 154.5); ncbp-2 (Caenorhabditis elegans, 150.2); CBP20 (Arabidopsis thaliana, 151.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:189832-190458:+ | gene-YPL178W_AKU4011 | rna-NM_001183992.1_AKU4011 | cds-NP_015147.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:395434-396060:+ | gene-YPL178W_BG1 | rna-NM_001183992.1_BG1 | cds-NP_015147.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:215678-216304:+ | gene-YPL178W_Bruggeman | rna-NM_001183992.1_Bruggeman | cds-NP_015147.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:212488-213114:+ | gene-YPL178W_CAT1 | rna-NM_001183992.1_CAT1 | cds-NP_015147.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:193897-194523:+ | gene-YPL178W_CBS1585 | rna-NM_001183992.1_CBS1585 | cds-NP_015147.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:208546-209172:+ | gene-YPL178W_CBS436 | rna-NM_001183992.1_CBS436 | cds-NP_015147.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:198570-199196:+ | gene-YPL178W_CBS6412 | rna-NM_001183992.1_CBS6412 | cds-NP_015147.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:190536-191162:+ | gene-YPL178W_CBS6413 | rna-NM_001183992.1_CBS6413 | cds-NP_015147.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:212040-212666:+ | gene-YPL178W_CENPK1137D | rna-NM_001183992.1_CENPK1137D | cds-NP_015147.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:188574-189200:+ | gene-YPL178W_EthanolRed | rna-NM_001183992.1_EthanolRed | cds-NP_015147.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:196166-196792:+ | gene-YPL178W_FaliES1 | rna-NM_001183992.1_FaliES1 | cds-NP_015147.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:169117-169743:- | gene-YPL178W_JAY291 | rna-NM_001183992.1_JAY291 | cds-NP_015147.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:207061-207687:+ | gene-YPL178W_MUCL30387 | rna-NM_001183992.1_MUCL30387 | cds-NP_015147.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:205079-205705:+ | gene-YPL178W_MUCL30388 | rna-NM_001183992.1_MUCL30388 | cds-NP_015147.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:187226-187852:+ | gene-YPL178W_MUCL39482 | rna-NM_001183992.1_MUCL39482 | cds-NP_015147.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:243908-244534:+ | gene-YPL178W_MUCL42920 | rna-NM_001183992.1_MUCL42920 | cds-NP_015147.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:212141-212767:+ | gene-YPL178W_NCIM3186 | rna-NM_001183992.1_NCIM3186 | cds-NP_015147.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:193679-194305:+ | gene-YPL178W_NCYC1407 | rna-NM_001183992.1_NCYC1407 | cds-NP_015147.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:201113-201739:+ | gene-YPL178W_PE2H3 | rna-NM_001183992.1_PE2H3 | cds-NP_015147.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:200756-201382:+ | gene-YPL178W_PE2H4 | rna-NM_001183992.1_PE2H4 | cds-NP_015147.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:212158-212784:+ | gene-YPL178W_S288C | rna-NM_001183992.1_S288C | cds-NP_015147.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:160889-161515:- | gene-YPL178W_SA1 | rna-NM_001183992.1_SA1 | cds-NP_015147.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:195964-196590:+ | gene-YPL178W_ThermosaccDry | rna-NM_001183992.1_ThermosaccDry | cds-NP_015147.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:210886-211512:+ | gene-YPL178W_VR1 | rna-NM_001183992.1_VR1 | cds-NP_015147.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:195293-195919:+ | gene-YPL178W_ZTW1 | rna-NM_001183992.1_ZTW1 | cds-NP_015147.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:196908-197534:+ | gene-YPL178W_Sparadoxus | rna-NM_001183992.1_Sparadoxus | cds-NP_015147.1_Sparadoxus | 92.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |