Gene name: CAR2
Reference locus (S288C): YLR438W
Gene biotype: protein_coding
Description: L-ornithine transaminase (OTAse); catalyzes the second step of arginine degradation, expression is dually-regulated by allophanate induction and a specific arginine induction process; not nitrogen catabolite repression sensitive; protein abundance increases in response to DNA replication stress; human homolog OAT complements yeast null mutant
Top 10 interactors (score): CAR1 (0.999); ARG3 (0.998); PRO2 (0.998); PRO1 (0.996); PUT2 (0.991); SPE1 (0.989); PRO3 (0.981); YHR033W (0.967); ARG5,6 (0.963); PUT1 (0.937); ARG1 (0.888); ARG4 (0.88); DUR1,2 (0.843); CPA2 (0.798); UME6 (0.78); ARG7 (0.768); UGA2 (0.741); SPE3 (0.734); GDH2 (0.721); ARG80 (0.693)
Homologues (species, bitscore): OAT (Homo sapiens, 413.7); Oat (Mus musculus, 418.3); oat (Danio rerio, 426.4); oat.1 (Xenopus tropicalis, 429.5); Oat (Drosophila melanogaster, 425.2); C16A3.10 (Caenorhabditis elegans, 419.1); DELTA-OAT (Arabidopsis thaliana, 448.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:950763-952037:+ | gene-YLR438W_AKU4011 | rna-NM_001182326.1_AKU4011 | cds-NP_013542.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:183222-184496:+ | gene-YLR438W_BG1 | rna-NM_001182326.1_BG1 | cds-NP_013542.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:989067-990341:+ | gene-YLR438W_Bruggeman | rna-NM_001182326.1_Bruggeman | cds-NP_013542.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:985078-986352:+ | gene-YLR438W_CAT1 | rna-NM_001182326.1_CAT1 | cds-NP_013542.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:986354-987628:+ | gene-YLR438W_CBS1585 | rna-NM_001182326.1_CBS1585 | cds-NP_013542.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:975700-976974:+ | gene-YLR438W_CBS436 | rna-NM_001182326.1_CBS436 | cds-NP_013542.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:1022394-1023668:+ | gene-YLR438W_CBS6412 | rna-NM_001182326.1_CBS6412 | cds-NP_013542.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:987142-988416:+ | gene-YLR438W_CBS6413 | rna-NM_001182326.1_CBS6413 | cds-NP_013542.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:997118-998392:+ | gene-YLR438W_CENPK1137D | rna-NM_001182326.1_CENPK1137D | cds-NP_013542.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:943785-945059:+ | gene-YLR438W_EthanolRed | rna-NM_001182326.1_EthanolRed | cds-NP_013542.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:979056-980330:+ | gene-YLR438W_FaliES1 | rna-NM_001182326.1_FaliES1 | cds-NP_013542.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000194.1:38359-39633:- | gene-YLR438W_JAY291 | rna-NM_001182326.1_JAY291 | cds-NP_013542.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:987928-989202:+ | gene-YLR438W_MUCL30387 | rna-NM_001182326.1_MUCL30387 | cds-NP_013542.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:995285-996559:+ | gene-YLR438W_MUCL30388 | rna-NM_001182326.1_MUCL30388 | cds-NP_013542.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:987574-988848:+ | gene-YLR438W_MUCL39482 | rna-NM_001182326.1_MUCL39482 | cds-NP_013542.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:988076-989350:+ | gene-YLR438W_MUCL42920 | rna-NM_001182326.1_MUCL42920 | cds-NP_013542.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:1012475-1013749:+ | gene-YLR438W_NCIM3186 | rna-NM_001182326.1_NCIM3186 | cds-NP_013542.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:997008-998282:+ | gene-YLR438W_NCYC1407 | rna-NM_001182326.1_NCYC1407 | cds-NP_013542.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:983453-984727:+ | gene-YLR438W_PE2H3 | rna-NM_001182326.1_PE2H3 | cds-NP_013542.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:983197-984471:+ | gene-YLR438W_PE2H4 | rna-NM_001182326.1_PE2H4 | cds-NP_013542.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:1012501-1013775:+ | gene-YLR438W_S288C | rna-NM_001182326.1_S288C | cds-NP_013542.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:46178-47452:- | gene-YLR438W_SA1 | rna-NM_001182326.1_SA1 | cds-NP_013542.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:982135-983409:+ | gene-YLR438W_ThermosaccDry | rna-NM_001182326.1_ThermosaccDry | cds-NP_013542.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:988558-989832:+ | gene-YLR438W_VR1 | rna-NM_001182326.1_VR1 | cds-NP_013542.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:312407-313681:+ | gene-YLR438W_ZTW1 | rna-NM_001182326.1_ZTW1 | cds-NP_013542.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:961530-962804:+ | gene-YLR438W_Sparadoxus | rna-NM_001182326.1_Sparadoxus | cds-NP_013542.1_Sparadoxus | 92.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |