Gene name: CAF20
Reference locus (S288C): YOR276W
Gene biotype: protein_coding
Description: Cap-associated protein CAF20; Phosphoprotein of the mRNA cap-binding complex; involved in translational control; repressor of cap-dependent translation initiation; competes with eIF4G for binding to eIF4E; Belongs to the CAF20 family
Top 10 interactors (score): CDC33 (0.999); EAP1 (0.974); SRO9 (0.963); TIF4631 (0.932); TIF4632 (0.907); MPT5 (0.896); SLF1 (0.871); PUF4 (0.867); TIF1 (0.859); RPL33B (0.852); DED1 (0.822); RPL9A (0.806); DHH1 (0.797); TIF11 (0.796); PAB1 (0.758); RPL33A (0.752); RPS3 (0.743); RPS22A (0.742); RPO26 (0.736); LSM1 (0.735)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:832143-832628:+ | gene-YOR276W_AKU4011 | rna-NM_001183695.3_AKU4011 | cds-NP_014919.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:234107-234592:+ | gene-YOR276W_BG1 | rna-NM_001183695.3_BG1 | cds-NP_014919.3_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:817577-818062:+ | gene-YOR276W_Bruggeman | rna-NM_001183695.3_Bruggeman | cds-NP_014919.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:818248-818733:+ | gene-YOR276W_CAT1 | rna-NM_001183695.3_CAT1 | cds-NP_014919.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:815161-815646:+ | gene-YOR276W_CBS1585 | rna-NM_001183695.3_CBS1585 | cds-NP_014919.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:813809-814294:+ | gene-YOR276W_CBS436 | rna-NM_001183695.3_CBS436 | cds-NP_014919.3_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:812014-812499:+ | gene-YOR276W_CBS6412 | rna-NM_001183695.3_CBS6412 | cds-NP_014919.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:820872-821357:+ | gene-YOR276W_CBS6413 | rna-NM_001183695.3_CBS6413 | cds-NP_014919.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:841103-841588:+ | gene-YOR276W_CENPK1137D | rna-NM_001183695.3_CENPK1137D | cds-NP_014919.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:808270-808755:+ | gene-YOR276W_EthanolRed | rna-NM_001183695.3_EthanolRed | cds-NP_014919.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:813669-814154:+ | gene-YOR276W_FaliES1 | rna-NM_001183695.3_FaliES1 | cds-NP_014919.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000381.1:12761-13246:- | gene-YOR276W_JAY291 | rna-NM_001183695.3_JAY291 | cds-NP_014919.3_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:821814-822299:+ | gene-YOR276W_MUCL30387 | rna-NM_001183695.3_MUCL30387 | cds-NP_014919.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:829791-830276:+ | gene-YOR276W_MUCL30388 | rna-NM_001183695.3_MUCL30388 | cds-NP_014919.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:822507-822992:+ | gene-YOR276W_MUCL39482 | rna-NM_001183695.3_MUCL39482 | cds-NP_014919.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:831993-832478:+ | gene-YOR276W_MUCL42920 | rna-NM_001183695.3_MUCL42920 | cds-NP_014919.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:841222-841707:+ | gene-YOR276W_NCIM3186 | rna-NM_001183695.3_NCIM3186 | cds-NP_014919.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:822712-823197:+ | gene-YOR276W_NCYC1407 | rna-NM_001183695.3_NCYC1407 | cds-NP_014919.3_NCYC1407 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:821789-822274:+ | gene-YOR276W_PE2H3 | rna-NM_001183695.3_PE2H3 | cds-NP_014919.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:832166-832651:+ | gene-YOR276W_PE2H4 | rna-NM_001183695.3_PE2H4 | cds-NP_014919.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:841333-841818:+ | gene-YOR276W_S288C | rna-NM_001183695.3_S288C | cds-NP_014919.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:251350-251835:+ | gene-YOR276W_SA1 | rna-NM_001183695.3_SA1 | cds-NP_014919.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:812852-813337:+ | gene-YOR276W_ThermosaccDry | rna-NM_001183695.3_ThermosaccDry | cds-NP_014919.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:876229-876714:+ | gene-YOR276W_VR1 | rna-NM_001183695.3_VR1 | cds-NP_014919.3_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:545740-546225:+ | gene-YOR276W_ZTW1 | rna-NM_001183695.3_ZTW1 | cds-NP_014919.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:818480-818965:+ | gene-YOR276W_Sparadoxus | rna-NM_001183695.3_Sparadoxus | cds-NP_014919.3_Sparadoxus | 95.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |