Gene name: CAF16
Reference locus (S288C): YFL028C
Gene biotype: protein_coding
Description: CCR4-associated factor 16; Part of evolutionarily-conserved CCR4-NOT regulatory complex; contains single ABC-type ATPase domain but no transmembrane domain; interacts with several subunits of Mediator; Belongs to the ABC transporter superfamily
Top 10 interactors (score): CCR4 (0.98); CAF4 (0.978); NOT3 (0.97); CAF40 (0.97); CDC39 (0.96); NOT5 (0.96); CDC36 (0.958); CAF130 (0.956); BTT1 (0.956); MOT2 (0.921); YDR061W (0.91); POP2 (0.907); RBG2 (0.762); POP1 (0.758); DHH1 (0.736); SAH1 (0.687); YJL055W (0.652); GCN1 (0.638); SLH1 (0.636); YFR045W (0.621)
Homologues (species, bitscore): ABCA10 (Homo sapiens, 60.8); Abca8a (Mus musculus, 59.3); abch1 (Danio rerio, 61.2); abcb10 (Xenopus tropicalis, 62.4); CG11147 (Drosophila melanogaster, 76.3); abt-5 (Caenorhabditis elegans, 74.3); ABCI21 (Arabidopsis thaliana, 181.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:75686-76555:- | gene-YFL028C_AKU4011 | rna-NM_001179938.1_AKU4011 | cds-NP_116625.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000089.1:6022-6891:- | gene-YFL028C_BG1 | rna-NM_001179938.1_BG1 | cds-NP_116625.1_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:74564-75433:- | gene-YFL028C_Bruggeman | rna-NM_001179938.1_Bruggeman | cds-NP_116625.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:79711-80580:- | gene-YFL028C_CAT1 | rna-NM_001179938.1_CAT1 | cds-NP_116625.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:76494-77363:- | gene-YFL028C_CBS1585 | rna-NM_001179938.1_CBS1585 | cds-NP_116625.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:50010-50879:- | gene-YFL028C_CBS436 | rna-NM_001179938.1_CBS436 | cds-NP_116625.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:76228-77097:- | gene-YFL028C_CBS6412 | rna-NM_001179938.1_CBS6412 | cds-NP_116625.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:78763-79632:- | gene-YFL028C_CBS6413 | rna-NM_001179938.1_CBS6413 | cds-NP_116625.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:75670-76539:- | gene-YFL028C_CENPK1137D | rna-NM_001179938.1_CENPK1137D | cds-NP_116625.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:74651-75520:- | gene-YFL028C_EthanolRed | rna-NM_001179938.1_EthanolRed | cds-NP_116625.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:76290-77159:- | gene-YFL028C_FaliES1 | rna-NM_001179938.1_FaliES1 | cds-NP_116625.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000448.1:84691-85560:- | gene-YFL028C_JAY291 | rna-NM_001179938.1_JAY291 | cds-NP_116625.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:76659-77528:- | gene-YFL028C_MUCL30387 | rna-NM_001179938.1_MUCL30387 | cds-NP_116625.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:74596-75465:- | gene-YFL028C_MUCL30388 | rna-NM_001179938.1_MUCL30388 | cds-NP_116625.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:74879-75748:- | gene-YFL028C_MUCL39482 | rna-NM_001179938.1_MUCL39482 | cds-NP_116625.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:72999-73868:- | gene-YFL028C_MUCL42920 | rna-NM_001179938.1_MUCL42920 | cds-NP_116625.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:79343-80212:- | gene-YFL028C_NCIM3186 | rna-NM_001179938.1_NCIM3186 | cds-NP_116625.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:75968-76837:- | gene-YFL028C_NCYC1407 | rna-NM_001179938.1_NCYC1407 | cds-NP_116625.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:95881-96750:- | gene-YFL028C_PE2H3 | rna-NM_001179938.1_PE2H3 | cds-NP_116625.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:95432-96301:- | gene-YFL028C_PE2H4 | rna-NM_001179938.1_PE2H4 | cds-NP_116625.1_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:79344-80213:- | gene-YFL028C_S288C | rna-NM_001179938.1_S288C | cds-NP_116625.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000117.1:3410-4279:- | gene-YFL028C_SA1 | rna-NM_001179938.1_SA1 | cds-NP_116625.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:75473-76342:- | gene-YFL028C_ThermosaccDry | rna-NM_001179938.1_ThermosaccDry | cds-NP_116625.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:84019-84888:- | gene-YFL028C_VR1 | rna-NM_001179938.1_VR1 | cds-NP_116625.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:5955-6824:- | gene-YFL028C_ZTW1 | rna-NM_001179938.1_ZTW1 | cds-NP_116625.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:99733-100602:- | gene-YFL028C_Sparadoxus | rna-NM_001179938.1_Sparadoxus | cds-NP_116625.1_Sparadoxus | 90.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |