Gene name: CAF130
Reference locus (S288C): YGR134W
Gene biotype: protein_coding
Description: Protein CAF130; Subunit of the CCR4-NOT transcriptional regulatory complex; CCR4-NOT complex is evolutionarily-conserved and involved in controlling mRNA initiation, elongation, and degradation
Top 10 interactors (score): CAF40 (0.999); CDC39 (0.999); NOT5 (0.999); MOT2 (0.997); CCR4 (0.994); CDC36 (0.989); NOT3 (0.987); POP2 (0.984); BTT1 (0.981); CAF16 (0.956); RRP42 (0.92); SKI6 (0.918); CAF4 (0.853); YJR011C (0.79); DHH1 (0.76); EGD2 (0.689); MPT5 (0.619); DBF2 (0.605); XRN1 (0.6); JHD2 (0.563)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:736748-740116:+ | gene-YGR134W_AKU4011 | rna-NM_001181263.3_AKU4011 | cds-NP_011650.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:15520-18888:+ | gene-YGR134W_BG1 | rna-NM_001181263.3_BG1 | cds-NP_011650.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:739544-742912:+ | gene-YGR134W_Bruggeman | rna-NM_001181263.3_Bruggeman | cds-NP_011650.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:738292-741660:+ | gene-YGR134W_CAT1 | rna-NM_001181263.3_CAT1 | cds-NP_011650.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:737731-741099:+ | gene-YGR134W_CBS1585 | rna-NM_001181263.3_CBS1585 | cds-NP_011650.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:741121-744489:+ | gene-YGR134W_CBS436 | rna-NM_001181263.3_CBS436 | cds-NP_011650.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:729407-732775:+ | gene-YGR134W_CBS6412 | rna-NM_001181263.3_CBS6412 | cds-NP_011650.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:734340-737708:+ | gene-YGR134W_CBS6413 | rna-NM_001181263.3_CBS6413 | cds-NP_011650.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:757482-760850:+ | gene-YGR134W_CENPK1137D | rna-NM_001181263.3_CENPK1137D | cds-NP_011650.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:723772-727140:+ | gene-YGR134W_EthanolRed | rna-NM_001181263.3_EthanolRed | cds-NP_011650.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:727633-731001:+ | gene-YGR134W_FaliES1 | rna-NM_001181263.3_FaliES1 | cds-NP_011650.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000305.1:2844-6212:- | gene-YGR134W_JAY291 | rna-NM_001181263.3_JAY291 | cds-NP_011650.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:846684-850052:+ | gene-YGR134W_MUCL30387 | rna-NM_001181263.3_MUCL30387 | cds-NP_011650.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:739559-742927:+ | gene-YGR134W_MUCL30388 | rna-NM_001181263.3_MUCL30388 | cds-NP_011650.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:733457-736825:+ | gene-YGR134W_MUCL39482 | rna-NM_001181263.3_MUCL39482 | cds-NP_011650.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:743555-746923:+ | gene-YGR134W_MUCL42920 | rna-NM_001181263.3_MUCL42920 | cds-NP_011650.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:757770-761138:+ | gene-YGR134W_NCIM3186 | rna-NM_001181263.3_NCIM3186 | cds-NP_011650.3_NCIM3186 | 93.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:728158-731526:+ | gene-YGR134W_NCYC1407 | rna-NM_001181263.3_NCYC1407 | cds-NP_011650.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:748011-751379:+ | gene-YGR134W_PE2H3 | rna-NM_001181263.3_PE2H3 | cds-NP_011650.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:753121-756489:+ | gene-YGR134W_PE2H4 | rna-NM_001181263.3_PE2H4 | cds-NP_011650.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:757770-761138:+ | gene-YGR134W_S288C | rna-NM_001181263.3_S288C | cds-NP_011650.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:178906-182274:+ | gene-YGR134W_SA1 | rna-NM_001181263.3_SA1 | cds-NP_011650.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:748256-751624:+ | gene-YGR134W_ThermosaccDry | rna-NM_001181263.3_ThermosaccDry | cds-NP_011650.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:851758-855126:+ | gene-YGR134W_VR1 | rna-NM_001181263.3_VR1 | cds-NP_011650.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:50402-53770:+ | gene-YGR134W_ZTW1 | rna-NM_001181263.3_ZTW1 | cds-NP_011650.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:738057-741431:+ | gene-YGR134W_Sparadoxus | rna-NM_001181263.3_Sparadoxus | cds-NP_011650.3_Sparadoxus | 89.1 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |