Gene name: CAF120
Reference locus (S288C): YNL278W
Gene biotype: protein_coding
Description: Part of the CCR4-NOT transcriptional regulatory complex; involved in controlling mRNA initiation, elongation, and degradation; contains a PH-like domain; CAF120 has a paralog, SKG3, that arose from the whole genome duplication
Top 10 interactors (score): SKG3 (0.859); RTK1 (0.768); RBH1 (0.711); FYV1 (0.696); RBH2 (0.671); VID27 (0.62); MOT2 (0.601); SPO71 (0.572); DAT1 (0.553); MRPL16 (0.551); MTE1 (0.499); CAF20 (0.49); MHF1 (0.485); AGE1 (0.452); MPT5 (0.451); SIP3 (0.45); CHD1 (0.45); RTS3 (0.431); EST1 (0.428)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:107078-110260:+ | gene-YNL278W_AKU4011 | rna-NM_001183116.1_AKU4011 | cds-NP_014121.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:10950-14132:+ | gene-YNL278W_BG1 | rna-NM_001183116.1_BG1 | cds-NP_014121.1_BG1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:116866-120048:+ | gene-YNL278W_Bruggeman | rna-NM_001183116.1_Bruggeman | cds-NP_014121.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:120125-123307:+ | gene-YNL278W_CAT1 | rna-NM_001183116.1_CAT1 | cds-NP_014121.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:107468-110650:+ | gene-YNL278W_CBS1585 | rna-NM_001183116.1_CBS1585 | cds-NP_014121.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:102547-105729:+ | gene-YNL278W_CBS436 | rna-NM_001183116.1_CBS436 | cds-NP_014121.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:103888-107070:+ | gene-YNL278W_CBS6412 | rna-NM_001183116.1_CBS6412 | cds-NP_014121.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:104171-107353:+ | gene-YNL278W_CBS6413 | rna-NM_001183116.1_CBS6413 | cds-NP_014121.1_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:107103-110285:+ | gene-YNL278W_CENPK1137D | rna-NM_001183116.1_CENPK1137D | cds-NP_014121.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:104695-107877:+ | gene-YNL278W_EthanolRed | rna-NM_001183116.1_EthanolRed | cds-NP_014121.1_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:99432-102614:+ | gene-YNL278W_FaliES1 | rna-NM_001183116.1_FaliES1 | cds-NP_014121.1_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000082.1:10658-13840:+ | gene-YNL278W_JAY291 | rna-NM_001183116.1_JAY291 | cds-NP_014121.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:111915-115097:+ | gene-YNL278W_MUCL30387 | rna-NM_001183116.1_MUCL30387 | cds-NP_014121.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:110470-113652:+ | gene-YNL278W_MUCL30388 | rna-NM_001183116.1_MUCL30388 | cds-NP_014121.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:104958-108140:+ | gene-YNL278W_MUCL39482 | rna-NM_001183116.1_MUCL39482 | cds-NP_014121.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:107208-110390:+ | gene-YNL278W_MUCL42920 | rna-NM_001183116.1_MUCL42920 | cds-NP_014121.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:113240-116422:+ | gene-YNL278W_NCIM3186 | rna-NM_001183116.1_NCIM3186 | cds-NP_014121.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:106825-110007:+ | gene-YNL278W_NCYC1407 | rna-NM_001183116.1_NCYC1407 | cds-NP_014121.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:103994-107176:+ | gene-YNL278W_PE2H3 | rna-NM_001183116.1_PE2H3 | cds-NP_014121.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:103382-106564:+ | gene-YNL278W_PE2H4 | rna-NM_001183116.1_PE2H4 | cds-NP_014121.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:113271-116453:+ | gene-YNL278W_S288C | rna-NM_001183116.1_S288C | cds-NP_014121.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000034.1:10723-13905:+ | gene-YNL278W_SA1 | rna-NM_001183116.1_SA1 | cds-NP_014121.1_SA1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:100289-103471:+ | gene-YNL278W_ThermosaccDry | rna-NM_001183116.1_ThermosaccDry | cds-NP_014121.1_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:119192-122374:+ | gene-YNL278W_VR1 | rna-NM_001183116.1_VR1 | cds-NP_014121.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:10657-13839:+ | gene-YNL278W_ZTW1 | rna-NM_001183116.1_ZTW1 | cds-NP_014121.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:110555-113710:+ | gene-YNL278W_Sparadoxus | rna-NM_001183116.1_Sparadoxus | cds-NP_014121.1_Sparadoxus | 87.8 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |