Gene name: BYE1
Reference locus (S288C): YKL005C
Gene biotype: protein_coding
Description: Transcription factor BYE1; Negative regulator of transcription elongation; contains a TFIIS-like domain that associates with chromatin and a PHD domain that interacts with H3K4me3; multicopy suppressor of temperature-sensitive ess1 mutations, binds RNA polymerase II large subunit
Top 10 interactors (score): RPO21 (0.942); DST1 (0.94); ESS1 (0.919); CAP1 (0.912); HHT1 (0.891); RPB11 (0.859); HHT2 (0.855); RPB3 (0.82); RPB9 (0.816); RPB2 (0.81); RPB5 (0.8); RPB8 (0.8); RPC10 (0.8); RPB10 (0.8); RPB7 (0.8); RPB4 (0.8); RPO26 (0.8); RTT103 (0.772); SPT6 (0.751); MLP2 (0.736)
Homologues (species, bitscore): ASH1L (Homo sapiens, 53.9); Ash1l (Mus musculus, 52.8); phf3 (Danio rerio, 62.0); phf3 (Xenopus tropicalis, 52.0); set-9 (Caenorhabditis elegans, 58.9); AT5G25520 (Arabidopsis thaliana, 67.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:419111-420895:- | gene-YKL005C_AKU4011 | rna-NM_001179571.3_AKU4011 | cds-NP_012921.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:223026-224810:+ | gene-YKL005C_BG1 | rna-NM_001179571.3_BG1 | cds-NP_012921.3_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:440800-442584:- | gene-YKL005C_Bruggeman | rna-NM_001179571.3_Bruggeman | cds-NP_012921.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:435904-437688:- | gene-YKL005C_CAT1 | rna-NM_001179571.3_CAT1 | cds-NP_012921.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:431829-433613:- | gene-YKL005C_CBS1585 | rna-NM_001179571.3_CBS1585 | cds-NP_012921.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:430675-432459:- | gene-YKL005C_CBS436 | rna-NM_001179571.3_CBS436 | cds-NP_012921.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:415987-417771:- | gene-YKL005C_CBS6412 | rna-NM_001179571.3_CBS6412 | cds-NP_012921.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:431684-433468:- | gene-YKL005C_CBS6413 | rna-NM_001179571.3_CBS6413 | cds-NP_012921.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:432770-434554:- | gene-YKL005C_CENPK1137D | rna-NM_001179571.3_CENPK1137D | cds-NP_012921.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:429591-431375:- | gene-YKL005C_EthanolRed | rna-NM_001179571.3_EthanolRed | cds-NP_012921.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:431681-433465:- | gene-YKL005C_FaliES1 | rna-NM_001179571.3_FaliES1 | cds-NP_012921.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000120.1:23357-25141:+ | gene-YKL005C_JAY291 | rna-NM_001179571.3_JAY291 | cds-NP_012921.3_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:440115-441899:- | gene-YKL005C_MUCL30387 | rna-NM_001179571.3_MUCL30387 | cds-NP_012921.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:435725-437509:- | gene-YKL005C_MUCL30388 | rna-NM_001179571.3_MUCL30388 | cds-NP_012921.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:431146-432930:- | gene-YKL005C_MUCL39482 | rna-NM_001179571.3_MUCL39482 | cds-NP_012921.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:436959-438743:- | gene-YKL005C_MUCL42920 | rna-NM_001179571.3_MUCL42920 | cds-NP_012921.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:433082-434866:- | gene-YKL005C_NCIM3186 | rna-NM_001179571.3_NCIM3186 | cds-NP_012921.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:431354-433138:- | gene-YKL005C_NCYC1407 | rna-NM_001179571.3_NCYC1407 | cds-NP_012921.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:456013-457797:- | gene-YKL005C_PE2H3 | rna-NM_001179571.3_PE2H3 | cds-NP_012921.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:440753-442537:- | gene-YKL005C_PE2H4 | rna-NM_001179571.3_PE2H4 | cds-NP_012921.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:433093-434877:- | gene-YKL005C_S288C | rna-NM_001179571.3_S288C | cds-NP_012921.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:111355-113139:- | gene-YKL005C_SA1 | rna-NM_001179571.3_SA1 | cds-NP_012921.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:431780-433564:- | gene-YKL005C_ThermosaccDry | rna-NM_001179571.3_ThermosaccDry | cds-NP_012921.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:431034-432818:- | gene-YKL005C_VR1 | rna-NM_001179571.3_VR1 | cds-NP_012921.3_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:429822-431606:- | gene-YKL005C_ZTW1 | rna-NM_001179571.3_ZTW1 | cds-NP_012921.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:454777-456561:- | gene-YKL005C_Sparadoxus | rna-NM_001179571.3_Sparadoxus | cds-NP_012921.3_Sparadoxus | 87.1 | 99.6 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |