Gene name: BUD5
Reference locus (S288C): YCR038C
Gene biotype: protein_coding
Description: Ras family guanine nucleotide exchange factor bud5; Bud site selection protein 5; GTP/GDP exchange factor for Rsr1p (Bud1p); required for both axial and bipolar budding patterns; mutants exhibit random budding in all cell types
Top 10 interactors (score): RSR1 (0.998); CDC42 (0.989); BUD2 (0.981); RHO4 (0.962); RHO2 (0.951); RHO1 (0.948); RHO3 (0.946); BUD9 (0.945); RHO5 (0.944); AXL2 (0.939); GEM1 (0.935); BUD3 (0.922); AXL1 (0.903); BUD8 (0.902); BUD4 (0.895); RAX1 (0.883); PIN3 (0.863); LSB1 (0.863); BEM1 (0.839); CDC24 (0.794)
Homologues (species, bitscore): RAPGEF5 (Homo sapiens, 75.1); Rapgef5 (Mus musculus, 71.2); rapgef5a (Danio rerio, 75.9); rapgef5 (Xenopus tropicalis, 79.7); Epac (Drosophila melanogaster, 62.0); pxf-1 (Caenorhabditis elegans, 70.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:45580-47506:- | gene-YCR038C_BG1 | rna-NM_001178752.1_BG1 | cds-NP_009967.2_BG1 | 99.5 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:187389-189317:- | gene-YCR038C_Bruggeman | rna-NM_001178752.1_Bruggeman | cds-NP_009967.2_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:179716-181644:- | gene-YCR038C_CBS6412 | rna-NM_001178752.1_CBS6412 | cds-NP_009967.2_CBS6412 | 66.7 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:196967-198915:- | gene-YCR038C_CENPK1137D | rna-NM_001178752.1_CENPK1137D | cds-NP_009967.2_CENPK1137D | 98.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:188863-190791:- | gene-YCR038C_EthanolRed | rna-NM_001178752.1_EthanolRed | cds-NP_009967.2_EthanolRed | 66.7 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000102.1:28258-29341:- | gene-YCR038C_JAY291 | rna-NM_001178752.1_JAY291 | cds-NP_009967.2_JAY291 | 56.0 | 56.1 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:184628-186556:- | gene-YCR038C_MUCL30387 | rna-NM_001178752.1_MUCL30387 | cds-NP_009967.2_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:184419-186347:- | gene-YCR038C_MUCL30388 | rna-NM_001178752.1_MUCL30388 | cds-NP_009967.2_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:189982-191910:- | gene-YCR038C_MUCL42920 | rna-NM_001178752.1_MUCL42920 | cds-NP_009967.2_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:197253-199181:- | gene-YCR038C_NCIM3186 | rna-NM_001178752.1_NCIM3186 | cds-NP_009967.2_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:202982-204914:- | gene-YCR038C_PE2H3 | rna-NM_001178752.1_PE2H3 | cds-NP_009967.2_PE2H3 | 99.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:197619-199549:- | gene-YCR038C_PE2H4 | rna-NM_001178752.1_PE2H4 | cds-NP_009967.2_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:197621-199549:- | gene-YCR038C_S288C | rna-NM_001178752.1_S288C | cds-NP_009967.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:203775-205713:- | gene-YCR038C_VR1 | rna-NM_001178752.1_VR1 | cds-NP_009967.2_VR1 | 68.0 | 87.6 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:191008-192936:- | gene-YCR038C_ZTW1 | rna-NM_001178752.1_ZTW1 | cds-NP_009967.2_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:41072-42788:- | gene-YCR038C_Sparadoxus | rna-NM_001178752.1_Sparadoxus | cds-NP_009967.2_Sparadoxus | 64.4 | 80.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |