Gene name: BUD23
Reference locus (S288C): YCR047C
Gene biotype: protein_coding
Description: Methyltransferase that methylates residue G1575 of 18S rRNA; required for rRNA processing and nuclear export of 40S ribosomal subunits independently of methylation activity; diploid mutant displays random budding pattern; functional homolog of human WBSCR22; Belongs to the class I-like SAM-binding methyltransferase superfamily. BUD23/WBSCR22 family
Top 10 interactors (score): TRM112 (0.999); ECM16 (0.996); ENP1 (0.992); EMG1 (0.99); LTV1 (0.99); NOB1 (0.99); SPB1 (0.987); MTQ2 (0.983); TRM11 (0.982); TRM8 (0.98); GCD14 (0.977); RRP8 (0.977); BMS1 (0.973); KRR1 (0.972); PNO1 (0.969); MRT4 (0.969); TRM9 (0.967); NIP7 (0.96); NOP14 (0.958); RIO2 (0.956)
Homologues (species, bitscore): WBSCR22 (Homo sapiens, 251.5); Wbscr22 (Mus musculus, 258.5); wbscr22 (Danio rerio, 270.0); wbscr22 (Xenopus tropicalis, 267.3); CG10903 (Drosophila melanogaster, 270.8); C27F2.4 (Caenorhabditis elegans, 232.6); RID2 (Arabidopsis thaliana, 266.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:205150-205977:- | gene-YCR047C_AKU4011 | rna-NM_001178761.1_AKU4011 | cds-NP_009976.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:59377-60204:- | gene-YCR047C_BG1 | rna-NM_001178761.1_BG1 | cds-NP_009976.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:201155-201982:- | gene-YCR047C_Bruggeman | rna-NM_001178761.1_Bruggeman | cds-NP_009976.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:212508-213335:- | gene-YCR047C_CAT1 | rna-NM_001178761.1_CAT1 | cds-NP_009976.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:199946-200773:- | gene-YCR047C_CBS1585 | rna-NM_001178761.1_CBS1585 | cds-NP_009976.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:211851-212678:- | gene-YCR047C_CBS436 | rna-NM_001178761.1_CBS436 | cds-NP_009976.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:191668-192495:- | gene-YCR047C_CBS6412 | rna-NM_001178761.1_CBS6412 | cds-NP_009976.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:206036-206863:- | gene-YCR047C_CBS6413 | rna-NM_001178761.1_CBS6413 | cds-NP_009976.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:209782-210609:- | gene-YCR047C_CENPK1137D | rna-NM_001178761.1_CENPK1137D | cds-NP_009976.1_CENPK1137D | 92.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:201140-201967:- | gene-YCR047C_EthanolRed | rna-NM_001178761.1_EthanolRed | cds-NP_009976.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:206305-207132:- | gene-YCR047C_FaliES1 | rna-NM_001178761.1_FaliES1 | cds-NP_009976.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000014.1:16032-16859:+ | gene-YCR047C_JAY291 | rna-NM_001178761.1_JAY291 | cds-NP_009976.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:198121-198948:- | gene-YCR047C_MUCL30387 | rna-NM_001178761.1_MUCL30387 | cds-NP_009976.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:197509-198336:- | gene-YCR047C_MUCL30388 | rna-NM_001178761.1_MUCL30388 | cds-NP_009976.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:206519-207346:- | gene-YCR047C_MUCL39482 | rna-NM_001178761.1_MUCL39482 | cds-NP_009976.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:202970-203797:- | gene-YCR047C_MUCL42920 | rna-NM_001178761.1_MUCL42920 | cds-NP_009976.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:210350-211177:- | gene-YCR047C_NCIM3186 | rna-NM_001178761.1_NCIM3186 | cds-NP_009976.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:207411-208238:- | gene-YCR047C_NCYC1407 | rna-NM_001178761.1_NCYC1407 | cds-NP_009976.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:216081-216908:- | gene-YCR047C_PE2H3 | rna-NM_001178761.1_PE2H3 | cds-NP_009976.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:210607-211434:- | gene-YCR047C_PE2H4 | rna-NM_001178761.1_PE2H4 | cds-NP_009976.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:210718-211545:- | gene-YCR047C_S288C | rna-NM_001178761.1_S288C | cds-NP_009976.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000044.1:10599-11426:- | gene-YCR047C_SA1 | rna-NM_001178761.1_SA1 | cds-NP_009976.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:206288-207115:- | gene-YCR047C_ThermosaccDry | rna-NM_001178761.1_ThermosaccDry | cds-NP_009976.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:217563-218390:- | gene-YCR047C_VR1 | rna-NM_001178761.1_VR1 | cds-NP_009976.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:204084-204911:- | gene-YCR047C_ZTW1 | rna-NM_001178761.1_ZTW1 | cds-NP_009976.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:238276-239103:- | gene-YCR047C_Sparadoxus | rna-NM_001178761.1_Sparadoxus | cds-NP_009976.1_Sparadoxus | 92.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |