Gene name: BUD21
Reference locus (S288C): YOR078W
Gene biotype: protein_coding
Description: Bud site selection protein 21; Component of small ribosomal subunit (SSU) processosome; this complex contains U3 snoRNA; required at post-transcriptional step for efficient retrotransposition; absence results in decreased Ty1 Gag:GFP protein levels; originally isolated as bud-site selection mutant that displays a random budding pattern; Belongs to the UTP16 family
Top 10 interactors (score): MPP10 (0.999); DIP2 (0.999); RRP9 (0.999); NOP1 (0.999); SOF1 (0.999); PWP2 (0.999); UTP18 (0.999); IMP4 (0.999); UTP7 (0.999); UTP4 (0.999); NOP14 (0.999); UTP6 (0.999); UTP10 (0.999); IMP3 (0.999); UTP8 (0.999); UTP9 (0.999); UTP14 (0.999); UTP21 (0.999); UTP13 (0.999); NOC4 (0.999)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:457074-457718:+ | gene-YOR078W_AKU4011 | rna-NM_001183497.1_AKU4011 | cds-NP_014721.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000171.1:121977-122621:- | gene-YOR078W_BG1 | rna-NM_001183497.1_BG1 | cds-NP_014721.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:459792-460436:+ | gene-YOR078W_Bruggeman | rna-NM_001183497.1_Bruggeman | cds-NP_014721.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:458559-459203:+ | gene-YOR078W_CAT1 | rna-NM_001183497.1_CAT1 | cds-NP_014721.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:451793-452437:+ | gene-YOR078W_CBS1585 | rna-NM_001183497.1_CBS1585 | cds-NP_014721.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:456592-457236:+ | gene-YOR078W_CBS436 | rna-NM_001183497.1_CBS436 | cds-NP_014721.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:451083-451727:+ | gene-YOR078W_CBS6412 | rna-NM_001183497.1_CBS6412 | cds-NP_014721.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:458400-459044:+ | gene-YOR078W_CBS6413 | rna-NM_001183497.1_CBS6413 | cds-NP_014721.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:472722-473366:+ | gene-YOR078W_CENPK1137D | rna-NM_001183497.1_CENPK1137D | cds-NP_014721.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:453785-454429:+ | gene-YOR078W_EthanolRed | rna-NM_001183497.1_EthanolRed | cds-NP_014721.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:457114-457758:+ | gene-YOR078W_FaliES1 | rna-NM_001183497.1_FaliES1 | cds-NP_014721.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000231.1:14228-14872:- | gene-YOR078W_JAY291 | rna-NM_001183497.1_JAY291 | cds-NP_014721.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:464575-465219:+ | gene-YOR078W_MUCL30387 | rna-NM_001183497.1_MUCL30387 | cds-NP_014721.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:469232-469876:+ | gene-YOR078W_MUCL30388 | rna-NM_001183497.1_MUCL30388 | cds-NP_014721.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:459508-460152:+ | gene-YOR078W_MUCL39482 | rna-NM_001183497.1_MUCL39482 | cds-NP_014721.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:475053-475697:+ | gene-YOR078W_MUCL42920 | rna-NM_001183497.1_MUCL42920 | cds-NP_014721.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:472614-473258:+ | gene-YOR078W_NCIM3186 | rna-NM_001183497.1_NCIM3186 | cds-NP_014721.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:466180-466824:+ | gene-YOR078W_NCYC1407 | rna-NM_001183497.1_NCYC1407 | cds-NP_014721.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:464828-465472:+ | gene-YOR078W_PE2H3 | rna-NM_001183497.1_PE2H3 | cds-NP_014721.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:475204-475848:+ | gene-YOR078W_PE2H4 | rna-NM_001183497.1_PE2H4 | cds-NP_014721.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:472725-473369:+ | gene-YOR078W_S288C | rna-NM_001183497.1_S288C | cds-NP_014721.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000091.1:14257-14901:- | gene-YOR078W_SA1 | rna-NM_001183497.1_SA1 | cds-NP_014721.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:456270-456914:+ | gene-YOR078W_ThermosaccDry | rna-NM_001183497.1_ThermosaccDry | cds-NP_014721.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:457765-458412:+ | gene-YOR078W_VR1 | rna-NM_001183497.1_VR1 | cds-NP_014721.1_VR1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:190267-190911:+ | gene-YOR078W_ZTW1 | rna-NM_001183497.1_ZTW1 | cds-NP_014721.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:461896-462546:+ | gene-YOR078W_Sparadoxus | rna-NM_001183497.1_Sparadoxus | cds-NP_014721.1_Sparadoxus | 87.0 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |