Gene name: BUD20
Reference locus (S288C): YLR074C
Gene biotype: protein_coding
Description: Bud site selection protein 20; C2H2-type zinc finger protein required for ribosome assembly; shuttling factor which associates with pre-60S particles in the nucleus, accompanying them to the cytoplasm; cytoplasmic dissociation of Bud20p requires Drg1p; N-terminus harbors a nuclear localization signal (NLS) and a nuclear export signal (NES); cytoplasmic Bud20p is reimported by Kap123-dependent pathway; involved in bud-site selection; diploid mutants display a random budding pattern; similar to human ZNF593
Top 10 interactors (score): NSA2 (0.999); NOG2 (0.999); RLP24 (0.999); NOP15 (0.999); RPF2 (0.999); RLP7 (0.999); MRT4 (0.999); TIF6 (0.999); NOG1 (0.999); NUG1 (0.999); ARX1 (0.999); NMD3 (0.999); NOP7 (0.999); CIC1 (0.998); RRS1 (0.997); IPI1 (0.997); CGR1 (0.996); RSA4 (0.995); MDN1 (0.995); RPF1 (0.995)
Homologues (species, bitscore): ZNF593 (Homo sapiens, 71.2); Zfp593 (Mus musculus, 63.9); znf593 (Danio rerio, 89.0); znf593 (Xenopus tropicalis, 97.1); CG3224 (Drosophila melanogaster, 88.2); Y56A3A.18 (Caenorhabditis elegans, 72.4); AT2G36930 (Arabidopsis thaliana, 63.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:264432-264932:- | gene-YLR074C_AKU4011 | rna-NM_001181961.1_AKU4011 | cds-NP_013175.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:227564-228064:- | gene-YLR074C_BG1 | rna-NM_001181961.1_BG1 | cds-NP_013175.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:274339-274839:- | gene-YLR074C_Bruggeman | rna-NM_001181961.1_Bruggeman | cds-NP_013175.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:274656-275156:- | gene-YLR074C_CAT1 | rna-NM_001181961.1_CAT1 | cds-NP_013175.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:271546-272046:- | gene-YLR074C_CBS1585 | rna-NM_001181961.1_CBS1585 | cds-NP_013175.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:262171-262671:- | gene-YLR074C_CBS436 | rna-NM_001181961.1_CBS436 | cds-NP_013175.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:269980-270480:- | gene-YLR074C_CBS6412 | rna-NM_001181961.1_CBS6412 | cds-NP_013175.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:271817-272317:- | gene-YLR074C_CBS6413 | rna-NM_001181961.1_CBS6413 | cds-NP_013175.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:266978-267478:- | gene-YLR074C_CENPK1137D | rna-NM_001181961.1_CENPK1137D | cds-NP_013175.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:263950-264450:- | gene-YLR074C_EthanolRed | rna-NM_001181961.1_EthanolRed | cds-NP_013175.1_EthanolRed | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:263826-264326:- | gene-YLR074C_FaliES1 | rna-NM_001181961.1_FaliES1 | cds-NP_013175.1_FaliES1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:38757-39257:- | gene-YLR074C_JAY291 | rna-NM_001181961.1_JAY291 | cds-NP_013175.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:271705-272205:- | gene-YLR074C_MUCL30387 | rna-NM_001181961.1_MUCL30387 | cds-NP_013175.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:279352-279852:- | gene-YLR074C_MUCL30388 | rna-NM_001181961.1_MUCL30388 | cds-NP_013175.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:272065-272565:- | gene-YLR074C_MUCL39482 | rna-NM_001181961.1_MUCL39482 | cds-NP_013175.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:271985-272485:- | gene-YLR074C_MUCL42920 | rna-NM_001181961.1_MUCL42920 | cds-NP_013175.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:281930-282430:- | gene-YLR074C_NCIM3186 | rna-NM_001181961.1_NCIM3186 | cds-NP_013175.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:264132-264632:- | gene-YLR074C_NCYC1407 | rna-NM_001181961.1_NCYC1407 | cds-NP_013175.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:269999-270499:- | gene-YLR074C_PE2H3 | rna-NM_001181961.1_PE2H3 | cds-NP_013175.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:269740-270240:- | gene-YLR074C_PE2H4 | rna-NM_001181961.1_PE2H4 | cds-NP_013175.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:281956-282456:- | gene-YLR074C_S288C | rna-NM_001181961.1_S288C | cds-NP_013175.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000033.1:91667-92167:+ | gene-YLR074C_SA1 | rna-NM_001181961.1_SA1 | cds-NP_013175.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:264002-264502:- | gene-YLR074C_ThermosaccDry | rna-NM_001181961.1_ThermosaccDry | cds-NP_013175.1_ThermosaccDry | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:277688-278188:- | gene-YLR074C_VR1 | rna-NM_001181961.1_VR1 | cds-NP_013175.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:263391-263891:- | gene-YLR074C_ZTW1 | rna-NM_001181961.1_ZTW1 | cds-NP_013175.1_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:272268-272768:- | gene-YLR074C_Sparadoxus | rna-NM_001181961.1_Sparadoxus | cds-NP_013175.1_Sparadoxus | 89.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |