Gene name: BUD13
Reference locus (S288C): YGL174W
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor CWC26; Subunit of the RES complex; RES complex is required for nuclear pre-mRNA retention and splicing; involved in bud-site selection; diploid mutants display a unipolar budding pattern instead of the wild-type bipolar pattern due to a specific defect in MATa1 pre-mRNA splicing which leads to haploid gene expression in diploids; Belongs to the CWC26 family
Top 10 interactors (score): CWC2 (0.999); PRP19 (0.999); HUB1 (0.999); SNT309 (0.999); HSH155 (0.999); PML1 (0.999); IST3 (0.999); CEF1 (0.999); SNU66 (0.999); BUD31 (0.998); CUS1 (0.998); HSH49 (0.997); PRP11 (0.996); CDC40 (0.995); CWC21 (0.994); LEA1 (0.993); PRP45 (0.993); RDS3 (0.993); PRP21 (0.993); YSF3 (0.993)
Homologues (species, bitscore): BUD13 (Homo sapiens, 54.7); Bud13 (Mus musculus, 53.5); BUD13 (Danio rerio, 61.2); bud13 (Xenopus tropicalis, 52.0); CG13625 (Drosophila melanogaster, 64.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:177117-177917:+ | gene-YGL174W_AKU4011 | rna-NM_001181039.3_AKU4011 | cds-NP_011341.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:232445-233245:- | gene-YGL174W_BG1 | rna-NM_001181039.3_BG1 | cds-NP_011341.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:179310-180110:+ | gene-YGL174W_Bruggeman | rna-NM_001181039.3_Bruggeman | cds-NP_011341.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:175180-175980:+ | gene-YGL174W_CAT1 | rna-NM_001181039.3_CAT1 | cds-NP_011341.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:180256-181056:+ | gene-YGL174W_CBS1585 | rna-NM_001181039.3_CBS1585 | cds-NP_011341.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:175170-175970:+ | gene-YGL174W_CBS436 | rna-NM_001181039.3_CBS436 | cds-NP_011341.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:166719-167519:+ | gene-YGL174W_CBS6412 | rna-NM_001181039.3_CBS6412 | cds-NP_011341.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:174568-175368:+ | gene-YGL174W_CBS6413 | rna-NM_001181039.3_CBS6413 | cds-NP_011341.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:174736-175536:+ | gene-YGL174W_CENPK1137D | rna-NM_001181039.3_CENPK1137D | cds-NP_011341.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:166924-167724:+ | gene-YGL174W_EthanolRed | rna-NM_001181039.3_EthanolRed | cds-NP_011341.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:168170-168970:+ | gene-YGL174W_FaliES1 | rna-NM_001181039.3_FaliES1 | cds-NP_011341.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000090.1:18404-19204:+ | gene-YGL174W_JAY291 | rna-NM_001181039.3_JAY291 | cds-NP_011341.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:176561-177361:+ | gene-YGL174W_MUCL30387 | rna-NM_001181039.3_MUCL30387 | cds-NP_011341.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:179648-180448:+ | gene-YGL174W_MUCL30388 | rna-NM_001181039.3_MUCL30388 | cds-NP_011341.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:177280-178080:+ | gene-YGL174W_MUCL39482 | rna-NM_001181039.3_MUCL39482 | cds-NP_011341.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:179865-180665:+ | gene-YGL174W_MUCL42920 | rna-NM_001181039.3_MUCL42920 | cds-NP_011341.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:174545-175345:+ | gene-YGL174W_NCIM3186 | rna-NM_001181039.3_NCIM3186 | cds-NP_011341.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:168744-169544:+ | gene-YGL174W_NCYC1407 | rna-NM_001181039.3_NCYC1407 | cds-NP_011341.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:170704-171504:+ | gene-YGL174W_PE2H3 | rna-NM_001181039.3_PE2H3 | cds-NP_011341.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:170252-171052:+ | gene-YGL174W_PE2H4 | rna-NM_001181039.3_PE2H4 | cds-NP_011341.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:174545-175345:+ | gene-YGL174W_S288C | rna-NM_001181039.3_S288C | cds-NP_011341.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000067.1:34362-35162:+ | gene-YGL174W_SA1 | rna-NM_001181039.3_SA1 | cds-NP_011341.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:168399-169199:+ | gene-YGL174W_ThermosaccDry | rna-NM_001181039.3_ThermosaccDry | cds-NP_011341.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:175606-176406:+ | gene-YGL174W_VR1 | rna-NM_001181039.3_VR1 | cds-NP_011341.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:166849-167649:+ | gene-YGL174W_ZTW1 | rna-NM_001181039.3_ZTW1 | cds-NP_011341.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:173713-174510:+ | gene-YGL174W_Sparadoxus | rna-NM_001181039.3_Sparadoxus | cds-NP_011341.3_Sparadoxus | 86.0 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |