Gene name: BRX1
Reference locus (S288C): YOL077C
Gene biotype: protein_coding
Description: Ribosome biogenesis protein BRX1; Nucleolar protein; constituent of 66S pre-ribosomal particles; depletion leads to defects in rRNA processing and a block in the assembly of large ribosomal subunits; possesses a sigma(70)-like RNA-binding motif
Top 10 interactors (score): RPF2 (0.999); NOC3 (0.999); YTM1 (0.999); SPB1 (0.999); NOP16 (0.999); NOP15 (0.999); RRS1 (0.999); RPF1 (0.999); MAK5 (0.999); NOP2 (0.999); NSA2 (0.999); NOG2 (0.999); NOP12 (0.999); IMP4 (0.999); HAS1 (0.999); NSA1 (0.999); NOP58 (0.999); RLP24 (0.999); DRS1 (0.999); RRP1 (0.999)
Homologues (species, bitscore): BRIX1 (Homo sapiens, 273.1); Brix1 (Mus musculus, 273.9); bxdc2 (Danio rerio, 278.5); brix1 (Xenopus tropicalis, 280.8); CG11583 (Drosophila melanogaster, 243.0); K12H4.3 (Caenorhabditis elegans, 232.6); AT3G15460 (Arabidopsis thaliana, 249.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:169488-170363:- | gene-YOL077C_AKU4011 | rna-NM_001183331.2_AKU4011 | cds-NP_014565.2_AKU4011 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000172.1:134299-135174:- | gene-YOL077C_BG1 | rna-NM_001183331.2_BG1 | cds-NP_014565.2_BG1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:171174-172049:- | gene-YOL077C_Bruggeman | rna-NM_001183331.2_Bruggeman | cds-NP_014565.2_Bruggeman | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:170666-171541:- | gene-YOL077C_CAT1 | rna-NM_001183331.2_CAT1 | cds-NP_014565.2_CAT1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:163881-164756:- | gene-YOL077C_CBS1585 | rna-NM_001183331.2_CBS1585 | cds-NP_014565.2_CBS1585 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:169065-169940:- | gene-YOL077C_CBS436 | rna-NM_001183331.2_CBS436 | cds-NP_014565.2_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:163809-164684:- | gene-YOL077C_CBS6412 | rna-NM_001183331.2_CBS6412 | cds-NP_014565.2_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:170744-171619:- | gene-YOL077C_CBS6413 | rna-NM_001183331.2_CBS6413 | cds-NP_014565.2_CBS6413 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:185603-186478:- | gene-YOL077C_CENPK1137D | rna-NM_001183331.2_CENPK1137D | cds-NP_014565.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:166803-167678:- | gene-YOL077C_EthanolRed | rna-NM_001183331.2_EthanolRed | cds-NP_014565.2_EthanolRed | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:169130-170005:- | gene-YOL077C_FaliES1 | rna-NM_001183331.2_FaliES1 | cds-NP_014565.2_FaliES1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000018.1:95532-96407:+ | gene-YOL077C_JAY291 | rna-NM_001183331.2_JAY291 | cds-NP_014565.2_JAY291 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:174944-175819:- | gene-YOL077C_MUCL30387 | rna-NM_001183331.2_MUCL30387 | cds-NP_014565.2_MUCL30387 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:178623-179498:- | gene-YOL077C_MUCL30388 | rna-NM_001183331.2_MUCL30388 | cds-NP_014565.2_MUCL30388 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:171802-172677:- | gene-YOL077C_MUCL39482 | rna-NM_001183331.2_MUCL39482 | cds-NP_014565.2_MUCL39482 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:187296-188171:- | gene-YOL077C_MUCL42920 | rna-NM_001183331.2_MUCL42920 | cds-NP_014565.2_MUCL42920 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:185737-186612:- | gene-YOL077C_NCIM3186 | rna-NM_001183331.2_NCIM3186 | cds-NP_014565.2_NCIM3186 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:178422-179297:- | gene-YOL077C_NCYC1407 | rna-NM_001183331.2_NCYC1407 | cds-NP_014565.2_NCYC1407 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:161418-162293:- | gene-YOL077C_PE2H3 | rna-NM_001183331.2_PE2H3 | cds-NP_014565.2_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:172407-173282:- | gene-YOL077C_PE2H4 | rna-NM_001183331.2_PE2H4 | cds-NP_014565.2_PE2H4 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:185848-186723:- | gene-YOL077C_S288C | rna-NM_001183331.2_S288C | cds-NP_014565.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:153728-154603:- | gene-YOL077C_SA1 | rna-NM_001183331.2_SA1 | cds-NP_014565.2_SA1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:168138-169013:- | gene-YOL077C_ThermosaccDry | rna-NM_001183331.2_ThermosaccDry | cds-NP_014565.2_ThermosaccDry | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:168918-169793:- | gene-YOL077C_VR1 | rna-NM_001183331.2_VR1 | cds-NP_014565.2_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:167801-168676:- | gene-YOL077C_ZTW1 | rna-NM_001183331.2_ZTW1 | cds-NP_014565.2_ZTW1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:171366-172241:- | gene-YOL077C_Sparadoxus | rna-NM_001183331.2_Sparadoxus | cds-NP_014565.2_Sparadoxus | 93.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |