Gene name: BRR2
Reference locus (S288C): YER172C
Gene biotype: protein_coding
Description: Pre-mRNA-splicing helicase BRR2; RNA-dependent ATPase RNA helicase (DEIH box); required for disruption of U4/U6 base-pairing in native snRNPs to activate the spliceosome for catalysis; homologous to human U5-200kD
Top 10 interactors (score): SYF2 (0.999); AAR2 (0.999); SNU23 (0.999); LEA1 (0.999); SMX3 (0.999); CWC2 (0.999); SMX2 (0.999); SNU114 (0.999); RSE1 (0.999); HUB1 (0.999); PRP19 (0.999); LSM8 (0.999); SMB1 (0.999); CDC40 (0.999); LSM5 (0.999); PRP9 (0.999); PRP38 (0.999); CUS1 (0.999); PRP8 (0.999); LSM2 (0.999)
Homologues (species, bitscore): SNRNP200 (Homo sapiens, 1538.1); Snrnp200 (Mus musculus, 1538.9); snrnp200 (Danio rerio, 1530.0); snrnp200 (Xenopus tropicalis, 1534.6); l(3)72Ab (Drosophila melanogaster, 1530.4); snrp-200 (Caenorhabditis elegans, 1411.0); emb1507 (Arabidopsis thaliana, 1508.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:511052-517543:- | gene-YER172C_AKU4011 | rna-NM_001179062.1_AKU4011 | cds-NP_011099.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000176.1:15824-22312:+ | gene-YER172C_BG1 | rna-NM_001179062.1_BG1 | cds-NP_011099.1_BG1 | 99.5 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:523794-530285:- | gene-YER172C_Bruggeman | rna-NM_001179062.1_Bruggeman | cds-NP_011099.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:510386-516874:- | gene-YER172C_CAT1 | rna-NM_001179062.1_CAT1 | cds-NP_011099.1_CAT1 | 99.5 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:510859-517350:- | gene-YER172C_CBS1585 | rna-NM_001179062.1_CBS1585 | cds-NP_011099.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:520754-527242:- | gene-YER172C_CBS436 | rna-NM_001179062.1_CBS436 | cds-NP_011099.1_CBS436 | 99.5 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:508836-515327:- | gene-YER172C_CBS6412 | rna-NM_001179062.1_CBS6412 | cds-NP_011099.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:517405-523896:- | gene-YER172C_CBS6413 | rna-NM_001179062.1_CBS6413 | cds-NP_011099.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:527299-533790:- | gene-YER172C_CENPK1137D | rna-NM_001179062.1_CENPK1137D | cds-NP_011099.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:517026-523517:- | gene-YER172C_EthanolRed | rna-NM_001179062.1_EthanolRed | cds-NP_011099.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:517962-524453:- | gene-YER172C_FaliES1 | rna-NM_001179062.1_FaliES1 | cds-NP_011099.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000169.1:15453-21944:+ | gene-YER172C_JAY291 | rna-NM_001179062.1_JAY291 | cds-NP_011099.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:511111-517599:- | gene-YER172C_MUCL30387 | rna-NM_001179062.1_MUCL30387 | cds-NP_011099.1_MUCL30387 | 99.6 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:514027-520515:- | gene-YER172C_MUCL30388 | rna-NM_001179062.1_MUCL30388 | cds-NP_011099.1_MUCL30388 | 99.6 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:506817-513308:- | gene-YER172C_MUCL39482 | rna-NM_001179062.1_MUCL39482 | cds-NP_011099.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:521343-527831:- | gene-YER172C_MUCL42920 | rna-NM_001179062.1_MUCL42920 | cds-NP_011099.1_MUCL42920 | 99.6 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:529529-536020:- | gene-YER172C_NCIM3186 | rna-NM_001179062.1_NCIM3186 | cds-NP_011099.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:516272-522763:- | gene-YER172C_NCYC1407 | rna-NM_001179062.1_NCYC1407 | cds-NP_011099.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:532205-538696:- | gene-YER172C_PE2H3 | rna-NM_001179062.1_PE2H3 | cds-NP_011099.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:522146-528637:- | gene-YER172C_PE2H4 | rna-NM_001179062.1_PE2H4 | cds-NP_011099.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:529530-536021:- | gene-YER172C_S288C | rna-NM_001179062.1_S288C | cds-NP_011099.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000030.1:81683-88174:- | gene-YER172C_SA1 | rna-NM_001179062.1_SA1 | cds-NP_011099.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:518762-525253:- | gene-YER172C_ThermosaccDry | rna-NM_001179062.1_ThermosaccDry | cds-NP_011099.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:512051-518539:- | gene-YER172C_VR1 | rna-NM_001179062.1_VR1 | cds-NP_011099.1_VR1 | 99.4 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000011.1:31609-38100:- | gene-YER172C_ZTW1 | rna-NM_001179062.1_ZTW1 | cds-NP_011099.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:519989-526483:- | gene-YER172C_Sparadoxus | rna-NM_001179062.1_Sparadoxus | cds-NP_011099.1_Sparadoxus | 89.0 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |