Gene name: BRR1
Reference locus (S288C): YPR057W
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor BRR1; snRNP protein component of spliceosomal snRNPs; required for pre-mRNA splicing and snRNP biogenesis; in null mutant newly-synthesized snRNAs are destabilized and 3'-end processing is slowed; Belongs to the BRR1 family
Top 10 interactors (score): SNU66 (0.999); MUD1 (0.928); LEA1 (0.915); CBC2 (0.907); SMB1 (0.899); TGS1 (0.899); SMD1 (0.897); SMD2 (0.861); MUD2 (0.841); CWC21 (0.839); SME1 (0.81); ISY1 (0.806); NAM8 (0.793); IST3 (0.786); PRP28 (0.777); BUD13 (0.749); SWT21 (0.745); STO1 (0.697); BRR2 (0.696); SMD3 (0.675)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:644139-645164:+ | gene-YPR057W_AKU4011 | rna-NM_001184154.1_AKU4011 | cds-NP_015382.1_AKU4011 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:252518-253543:- | gene-YPR057W_BG1 | rna-NM_001184154.1_BG1 | cds-NP_015382.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:721805-722830:+ | gene-YPR057W_Bruggeman | rna-NM_001184154.1_Bruggeman | cds-NP_015382.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:765259-766284:+ | gene-YPR057W_CAT1 | rna-NM_001184154.1_CAT1 | cds-NP_015382.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:647825-648850:+ | gene-YPR057W_CBS1585 | rna-NM_001184154.1_CBS1585 | cds-NP_015382.1_CBS1585 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:662201-663226:+ | gene-YPR057W_CBS436 | rna-NM_001184154.1_CBS436 | cds-NP_015382.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:651573-652598:+ | gene-YPR057W_CBS6412 | rna-NM_001184154.1_CBS6412 | cds-NP_015382.1_CBS6412 | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:644774-645799:+ | gene-YPR057W_CBS6413 | rna-NM_001184154.1_CBS6413 | cds-NP_015382.1_CBS6413 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:672436-673461:+ | gene-YPR057W_CENPK1137D | rna-NM_001184154.1_CENPK1137D | cds-NP_015382.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:971330-972355:+ | gene-YPR057W_EthanolRed | rna-NM_001184154.1_EthanolRed | cds-NP_015382.1_EthanolRed | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:649967-650992:+ | gene-YPR057W_FaliES1 | rna-NM_001184154.1_FaliES1 | cds-NP_015382.1_FaliES1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000446.1:21921-22946:+ | gene-YPR057W_JAY291 | rna-NM_001184154.1_JAY291 | cds-NP_015382.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:663066-664091:+ | gene-YPR057W_MUCL30387 | rna-NM_001184154.1_MUCL30387 | cds-NP_015382.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:661770-662795:+ | gene-YPR057W_MUCL30388 | rna-NM_001184154.1_MUCL30388 | cds-NP_015382.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:641082-642107:+ | gene-YPR057W_MUCL39482 | rna-NM_001184154.1_MUCL39482 | cds-NP_015382.1_MUCL39482 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:703907-704932:+ | gene-YPR057W_MUCL42920 | rna-NM_001184154.1_MUCL42920 | cds-NP_015382.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:672454-673479:+ | gene-YPR057W_NCIM3186 | rna-NM_001184154.1_NCIM3186 | cds-NP_015382.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:649012-650037:+ | gene-YPR057W_NCYC1407 | rna-NM_001184154.1_NCYC1407 | cds-NP_015382.1_NCYC1407 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:655224-656249:+ | gene-YPR057W_PE2H3 | rna-NM_001184154.1_PE2H3 | cds-NP_015382.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:654872-655897:+ | gene-YPR057W_PE2H4 | rna-NM_001184154.1_PE2H4 | cds-NP_015382.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:672471-673496:+ | gene-YPR057W_S288C | rna-NM_001184154.1_S288C | cds-NP_015382.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000026.1:27195-28220:- | gene-YPR057W_SA1 | rna-NM_001184154.1_SA1 | cds-NP_015382.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:649742-650767:+ | gene-YPR057W_ThermosaccDry | rna-NM_001184154.1_ThermosaccDry | cds-NP_015382.1_ThermosaccDry | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:665898-666923:+ | gene-YPR057W_VR1 | rna-NM_001184154.1_VR1 | cds-NP_015382.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:648968-649993:+ | gene-YPR057W_ZTW1 | rna-NM_001184154.1_ZTW1 | cds-NP_015382.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:649744-650769:+ | gene-YPR057W_Sparadoxus | rna-NM_001184154.1_Sparadoxus | cds-NP_015382.1_Sparadoxus | 90.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |