Gene name: BRN1
Reference locus (S288C): YBL097W
Gene biotype: protein_coding
Description: Subunit of the condensin complex; required for chromosome condensation and for clustering of tRNA genes at the nucleolus; may influence multiple aspects of chromosome transmission
Top 10 interactors (score): SMC4 (0.999); YCG1 (0.999); SMC2 (0.999); YCS4 (0.999); TOP2 (0.997); IPL1 (0.99); SMC3 (0.98); SMC5 (0.978); NDC80 (0.976); SMC1 (0.971); MCM3 (0.961); POL1 (0.959); ASE1 (0.952); CDC9 (0.952); MCM7 (0.95); MCM5 (0.95); CIN8 (0.947); ESP1 (0.945); SMC6 (0.939); CKB2 (0.928)
Homologues (species, bitscore): NCAPH (Homo sapiens, 114.8); Ncaph (Mus musculus, 139.0); ncaph (Danio rerio, 125.6); ncaph (Xenopus tropicalis, 124.8); barr (Drosophila melanogaster, 51.6); EMB2795 (Arabidopsis thaliana, 156.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:34393-36657:+ | gene-YBL097W_AKU4011 | rna-NM_001178337.2_AKU4011 | cds-NP_009455.3_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:25095-27359:+ | gene-YBL097W_BG1 | rna-NM_001178337.2_BG1 | cds-NP_009455.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:35022-37286:+ | gene-YBL097W_Bruggeman | rna-NM_001178337.2_Bruggeman | cds-NP_009455.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:36957-39221:+ | gene-YBL097W_CAT1 | rna-NM_001178337.2_CAT1 | cds-NP_009455.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:26462-28726:+ | gene-YBL097W_CBS1585 | rna-NM_001178337.2_CBS1585 | cds-NP_009455.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:35280-37535:+ | gene-YBL097W_CBS436 | rna-NM_001178337.2_CBS436 | cds-NP_009455.3_CBS436 | 99.6 | 99.6 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:26250-28514:+ | gene-YBL097W_CBS6412 | rna-NM_001178337.2_CBS6412 | cds-NP_009455.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:32592-34819:+ | gene-YBL097W_CBS6413 | rna-NM_001178337.2_CBS6413 | cds-NP_009455.3_CBS6413 | 97.7 | 98.3 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:34449-36713:+ | gene-YBL097W_CENPK1137D | rna-NM_001178337.2_CENPK1137D | cds-NP_009455.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:48634-50898:+ | gene-YBL097W_EthanolRed | rna-NM_001178337.2_EthanolRed | cds-NP_009455.3_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:48766-51030:+ | gene-YBL097W_FaliES1 | rna-NM_001178337.2_FaliES1 | cds-NP_009455.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000184.1:25792-28056:+ | gene-YBL097W_JAY291 | rna-NM_001178337.2_JAY291 | cds-NP_009455.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:34154-36418:+ | gene-YBL097W_MUCL30387 | rna-NM_001178337.2_MUCL30387 | cds-NP_009455.3_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:34812-37076:+ | gene-YBL097W_MUCL30388 | rna-NM_001178337.2_MUCL30388 | cds-NP_009455.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:26620-28884:+ | gene-YBL097W_MUCL39482 | rna-NM_001178337.2_MUCL39482 | cds-NP_009455.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:33508-35755:+ | gene-YBL097W_MUCL42920 | rna-NM_001178337.2_MUCL42920 | cds-NP_009455.3_MUCL42920 | 98.4 | 99.2 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:40628-42892:+ | gene-YBL097W_NCIM3186 | rna-NM_001178337.2_NCIM3186 | cds-NP_009455.3_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:28290-30554:+ | gene-YBL097W_NCYC1407 | rna-NM_001178337.2_NCYC1407 | cds-NP_009455.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:34582-36846:+ | gene-YBL097W_PE2H3 | rna-NM_001178337.2_PE2H3 | cds-NP_009455.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:32214-34478:+ | gene-YBL097W_PE2H4 | rna-NM_001178337.2_PE2H4 | cds-NP_009455.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:40831-43095:+ | gene-YBL097W_S288C | rna-NM_001178337.2_S288C | cds-NP_009455.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:24902-27166:+ | gene-YBL097W_SA1 | rna-NM_001178337.2_SA1 | cds-NP_009455.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:48728-50992:+ | gene-YBL097W_ThermosaccDry | rna-NM_001178337.2_ThermosaccDry | cds-NP_009455.3_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:30928-33192:+ | gene-YBL097W_VR1 | rna-NM_001178337.2_VR1 | cds-NP_009455.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:25949-28213:+ | gene-YBL097W_ZTW1 | rna-NM_001178337.2_ZTW1 | cds-NP_009455.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:60679-62943:+ | gene-YBL097W_Sparadoxus | rna-NM_001178337.2_Sparadoxus | cds-NP_009455.3_Sparadoxus | 88.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |