Gene name: BRE2
Reference locus (S288C): YLR015W
Gene biotype: protein_coding
Description: COMPASS component BRE2; Subunit of COMPASS (Set1C) complex; COMPASS methylates Lys4 of histone H3 and functions in silencing at telomeres; has a C-terminal Sdc1 Dpy-30 Interaction (SDI) domain that mediates binding to Sdc1p; similar to trithorax-group protein ASH2L
Top 10 interactors (score): SWD1 (0.999); SWD3 (0.999); SET1 (0.999); SPP1 (0.999); SDC1 (0.999); SWD2 (0.999); SHG1 (0.998); JHD2 (0.997); RPS31 (0.992); CYC8 (0.992); UBI4 (0.991); RTT107 (0.991); ECM5 (0.984); RPL40B (0.968); RPL40A (0.968); SET2 (0.933); BRE1 (0.916); HHT1 (0.86); HHT2 (0.851); HTZ1 (0.821)
Homologues (species, bitscore): TRO (Arabidopsis thaliana, 50.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:163162-164679:+ | gene-YLR015W_AKU4011 | rna-NM_001181902.1_AKU4011 | cds-NP_013115.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:126437-127954:+ | gene-YLR015W_BG1 | rna-NM_001181902.1_BG1 | cds-NP_013115.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:173563-175080:+ | gene-YLR015W_Bruggeman | rna-NM_001181902.1_Bruggeman | cds-NP_013115.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:173883-175400:+ | gene-YLR015W_CAT1 | rna-NM_001181902.1_CAT1 | cds-NP_013115.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:170790-172307:+ | gene-YLR015W_CBS1585 | rna-NM_001181902.1_CBS1585 | cds-NP_013115.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:161424-162941:+ | gene-YLR015W_CBS436 | rna-NM_001181902.1_CBS436 | cds-NP_013115.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:169197-170714:+ | gene-YLR015W_CBS6412 | rna-NM_001181902.1_CBS6412 | cds-NP_013115.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:171051-172568:+ | gene-YLR015W_CBS6413 | rna-NM_001181902.1_CBS6413 | cds-NP_013115.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:160477-161994:+ | gene-YLR015W_CENPK1137D | rna-NM_001181902.1_CENPK1137D | cds-NP_013115.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:163175-164692:+ | gene-YLR015W_EthanolRed | rna-NM_001181902.1_EthanolRed | cds-NP_013115.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:162746-164263:+ | gene-YLR015W_FaliES1 | rna-NM_001181902.1_FaliES1 | cds-NP_013115.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000431.1:6942-8459:+ | gene-YLR015W_JAY291 | rna-NM_001181902.1_JAY291 | cds-NP_013115.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:170910-172427:+ | gene-YLR015W_MUCL30387 | rna-NM_001181902.1_MUCL30387 | cds-NP_013115.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:176889-178406:+ | gene-YLR015W_MUCL30388 | rna-NM_001181902.1_MUCL30388 | cds-NP_013115.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:171285-172802:+ | gene-YLR015W_MUCL39482 | rna-NM_001181902.1_MUCL39482 | cds-NP_013115.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:171188-172705:+ | gene-YLR015W_MUCL42920 | rna-NM_001181902.1_MUCL42920 | cds-NP_013115.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:175201-176718:+ | gene-YLR015W_NCIM3186 | rna-NM_001181902.1_NCIM3186 | cds-NP_013115.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:162905-164422:+ | gene-YLR015W_NCYC1407 | rna-NM_001181902.1_NCYC1407 | cds-NP_013115.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:169220-170737:+ | gene-YLR015W_PE2H3 | rna-NM_001181902.1_PE2H3 | cds-NP_013115.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:168961-170478:+ | gene-YLR015W_PE2H4 | rna-NM_001181902.1_PE2H4 | cds-NP_013115.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:175227-176744:+ | gene-YLR015W_S288C | rna-NM_001181902.1_S288C | cds-NP_013115.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000046.1:7077-8594:+ | gene-YLR015W_SA1 | rna-NM_001181902.1_SA1 | cds-NP_013115.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:163249-164766:+ | gene-YLR015W_ThermosaccDry | rna-NM_001181902.1_ThermosaccDry | cds-NP_013115.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:176671-178188:+ | gene-YLR015W_VR1 | rna-NM_001181902.1_VR1 | cds-NP_013115.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:162615-164132:+ | gene-YLR015W_ZTW1 | rna-NM_001181902.1_ZTW1 | cds-NP_013115.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:171412-172929:+ | gene-YLR015W_Sparadoxus | rna-NM_001181902.1_Sparadoxus | cds-NP_013115.1_Sparadoxus | 88.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |