Gene name: BPH1
Reference locus (S288C): YCR032W
Gene biotype: protein_coding
Description: Wd repeat and fyve domain-containing protein 3; Protein homologous to Chediak-Higashi syndrome and Beige proteins; both of which are implicated in disease syndromes in human and mouse, respectively, due to defective lysosomal trafficking; mutant phenotype and genetic interactions suggest a role in protein sorting
Top 10 interactors (score): ATG8 (0.985); ATG5 (0.791); SNT1 (0.769); ISC1 (0.761); ASC1 (0.732); BTS1 (0.716); VMA6 (0.697); DCP1 (0.695); VPS30 (0.674); LIP5 (0.658); PPN1 (0.638); PEP3 (0.638); DUG2 (0.61); TUB2 (0.602); PUP3 (0.602); STV1 (0.601); SPT16 (0.597); VPS9 (0.596); APM3 (0.596); ATG12 (0.595)
Homologues (species, bitscore): WDFY3 (Homo sapiens, 412.5); Wdfy3 (Mus musculus, 412.1); wdfy3 (Danio rerio, 412.1); wdfy3 (Xenopus tropicalis, 412.9); bchs (Drosophila melanogaster, 430.6); C26H9A.2 (Caenorhabditis elegans, 412.1); AT4G02660 (Arabidopsis thaliana, 376.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:172988-179491:+ | gene-YCR032W_AKU4011 | rna-NM_001178746.1_AKU4011 | cds-NP_009961.2_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:27479-33982:+ | gene-YCR032W_BG1 | rna-NM_001178746.1_BG1 | cds-NP_009961.2_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:169273-175776:+ | gene-YCR032W_Bruggeman | rna-NM_001178746.1_Bruggeman | cds-NP_009961.2_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:180416-186919:+ | gene-YCR032W_CAT1 | rna-NM_001178746.1_CAT1 | cds-NP_009961.2_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:167749-174252:+ | gene-YCR032W_CBS1585 | rna-NM_001178746.1_CBS1585 | cds-NP_009961.2_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:179392-185895:+ | gene-YCR032W_CBS436 | rna-NM_001178746.1_CBS436 | cds-NP_009961.2_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:161602-168105:+ | gene-YCR032W_CBS6412 | rna-NM_001178746.1_CBS6412 | cds-NP_009961.2_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:173926-180429:+ | gene-YCR032W_CBS6413 | rna-NM_001178746.1_CBS6413 | cds-NP_009961.2_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:178861-185369:+ | gene-YCR032W_CENPK1137D | rna-NM_001178746.1_CENPK1137D | cds-NP_009961.2_CENPK1137D | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:170750-177253:+ | gene-YCR032W_EthanolRed | rna-NM_001178746.1_EthanolRed | cds-NP_009961.2_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:173866-180369:+ | gene-YCR032W_FaliES1 | rna-NM_001178746.1_FaliES1 | cds-NP_009961.2_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000102.1:10141-16644:+ | gene-YCR032W_JAY291 | rna-NM_001178746.1_JAY291 | cds-NP_009961.2_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:166512-173015:+ | gene-YCR032W_MUCL30387 | rna-NM_001178746.1_MUCL30387 | cds-NP_009961.2_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:166299-172802:+ | gene-YCR032W_MUCL30388 | rna-NM_001178746.1_MUCL30388 | cds-NP_009961.2_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:174073-180576:+ | gene-YCR032W_MUCL39482 | rna-NM_001178746.1_MUCL39482 | cds-NP_009961.2_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:171866-178369:+ | gene-YCR032W_MUCL42920 | rna-NM_001178746.1_MUCL42920 | cds-NP_009961.2_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:179152-185655:+ | gene-YCR032W_NCIM3186 | rna-NM_001178746.1_NCIM3186 | cds-NP_009961.2_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:175837-182340:+ | gene-YCR032W_NCYC1407 | rna-NM_001178746.1_NCYC1407 | cds-NP_009961.2_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:184881-191384:+ | gene-YCR032W_PE2H3 | rna-NM_001178746.1_PE2H3 | cds-NP_009961.2_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:179502-186005:+ | gene-YCR032W_PE2H4 | rna-NM_001178746.1_PE2H4 | cds-NP_009961.2_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:179520-186023:+ | gene-YCR032W_S288C | rna-NM_001178746.1_S288C | cds-NP_009961.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000083.1:27029-33532:+ | gene-YCR032W_SA1 | rna-NM_001178746.1_SA1 | cds-NP_009961.2_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:174642-181145:+ | gene-YCR032W_ThermosaccDry | rna-NM_001178746.1_ThermosaccDry | cds-NP_009961.2_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:185657-192160:+ | gene-YCR032W_VR1 | rna-NM_001178746.1_VR1 | cds-NP_009961.2_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:172894-179397:+ | gene-YCR032W_ZTW1 | rna-NM_001178746.1_ZTW1 | cds-NP_009961.2_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:207069-213575:+ | gene-YCR032W_Sparadoxus | rna-NM_001178746.1_Sparadoxus | cds-NP_009961.2_Sparadoxus | 88.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |