Gene name: BMS1
Reference locus (S288C): YPL217C
Gene biotype: protein_coding
Description: Ribosome biogenesis protein BMS1; GTPase required for ribosomal subunit synthesis and rRNA processing; required for synthesis of 40S ribosomal subunits and for processing the 35S pre-rRNA at sites A0, A1, and A2; interacts with Rcl1p, which stimulates its GTPase and U3 snoRNA binding activities; has similarity to Tsr1p; Belongs to the TRAFAC class translation factor GTPase superfamily. Bms1-like GTPase family. BMS1 subfamily
Top 10 interactors (score): NAN1 (0.999); UTP8 (0.999); PNO1 (0.999); IMP3 (0.999); UTP5 (0.999); RRP9 (0.999); DIP2 (0.999); UTP15 (0.999); NOP56 (0.999); MRD1 (0.999); ROK1 (0.999); PRP43 (0.999); MTR4 (0.999); ERB1 (0.999); PWP2 (0.999); LCP5 (0.999); NOP7 (0.999); ENP2 (0.999); UTP30 (0.999); UTP13 (0.999)
Homologues (species, bitscore): BMS1 (Homo sapiens, 808.1); Bms1 (Mus musculus, 802.7); bms1l (Danio rerio, 795.4); bms1 (Xenopus tropicalis, 788.1); CG7728 (Drosophila melanogaster, 759.2); Y61A9LA.10 (Caenorhabditis elegans, 731.5); AT1G06720 (Arabidopsis thaliana, 731.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:117509-121060:- | gene-YPL217C_AKU4011 | rna-NM_001184031.1_AKU4011 | cds-NP_015107.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:323271-326822:- | gene-YPL217C_BG1 | rna-NM_001184031.1_BG1 | cds-NP_015107.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:142592-146143:- | gene-YPL217C_Bruggeman | rna-NM_001184031.1_Bruggeman | cds-NP_015107.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:139579-143130:- | gene-YPL217C_CAT1 | rna-NM_001184031.1_CAT1 | cds-NP_015107.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:121695-125246:- | gene-YPL217C_CBS1585 | rna-NM_001184031.1_CBS1585 | cds-NP_015107.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:136110-139661:- | gene-YPL217C_CBS436 | rna-NM_001184031.1_CBS436 | cds-NP_015107.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:126498-130049:- | gene-YPL217C_CBS6412 | rna-NM_001184031.1_CBS6412 | cds-NP_015107.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:117872-121423:- | gene-YPL217C_CBS6413 | rna-NM_001184031.1_CBS6413 | cds-NP_015107.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:139566-143117:- | gene-YPL217C_CENPK1137D | rna-NM_001184031.1_CENPK1137D | cds-NP_015107.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:116601-120152:- | gene-YPL217C_EthanolRed | rna-NM_001184031.1_EthanolRed | cds-NP_015107.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:123807-127358:- | gene-YPL217C_FaliES1 | rna-NM_001184031.1_FaliES1 | cds-NP_015107.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000069.1:30970-34521:+ | gene-YPL217C_JAY291 | rna-NM_001184031.1_JAY291 | cds-NP_015107.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:134674-138225:- | gene-YPL217C_MUCL30387 | rna-NM_001184031.1_MUCL30387 | cds-NP_015107.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:132865-136416:- | gene-YPL217C_MUCL30388 | rna-NM_001184031.1_MUCL30388 | cds-NP_015107.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:114825-118376:- | gene-YPL217C_MUCL39482 | rna-NM_001184031.1_MUCL39482 | cds-NP_015107.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:133700-137251:- | gene-YPL217C_MUCL42920 | rna-NM_001184031.1_MUCL42920 | cds-NP_015107.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:139603-143154:- | gene-YPL217C_NCIM3186 | rna-NM_001184031.1_NCIM3186 | cds-NP_015107.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:121273-124824:- | gene-YPL217C_NCYC1407 | rna-NM_001184031.1_NCYC1407 | cds-NP_015107.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:128953-132504:- | gene-YPL217C_PE2H3 | rna-NM_001184031.1_PE2H3 | cds-NP_015107.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:128596-132147:- | gene-YPL217C_PE2H4 | rna-NM_001184031.1_PE2H4 | cds-NP_015107.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:139620-143171:- | gene-YPL217C_S288C | rna-NM_001184031.1_S288C | cds-NP_015107.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000095.1:31002-34553:+ | gene-YPL217C_SA1 | rna-NM_001184031.1_SA1 | cds-NP_015107.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:123588-127139:- | gene-YPL217C_ThermosaccDry | rna-NM_001184031.1_ThermosaccDry | cds-NP_015107.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:137653-141204:- | gene-YPL217C_VR1 | rna-NM_001184031.1_VR1 | cds-NP_015107.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:123127-126678:- | gene-YPL217C_ZTW1 | rna-NM_001184031.1_ZTW1 | cds-NP_015107.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:124710-128261:- | gene-YPL217C_Sparadoxus | rna-NM_001184031.1_Sparadoxus | cds-NP_015107.1_Sparadoxus | 91.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |