Gene name: BFR2
Reference locus (S288C): YDR299W
Gene biotype: protein_coding
Description: Protein BFR2; Component of the SSU and 90S preribosomes; involved in pre-18S rRNA processing; binds to U3 snoRNA and Mpp10p; multicopy suppressor of sensitivity to Brefeldin A; expression is induced during lag phase and also by cold shock
Top 10 interactors (score): KRI1 (0.999); NOP58 (0.999); KRR1 (0.999); RCL1 (0.999); BMS1 (0.999); RRP5 (0.999); UTP13 (0.999); UTP5 (0.999); ENP1 (0.999); UTP11 (0.999); UTP4 (0.999); UTP6 (0.999); PNO1 (0.999); IMP3 (0.999); SAS10 (0.999); UTP25 (0.999); RRP12 (0.999); TSR1 (0.999); UTP18 (0.999); IMP4 (0.999)
Homologues (species, bitscore): AATF (Homo sapiens, 87.8); Aatf (Mus musculus, 99.0); aatf (Danio rerio, 100.9); aatf (Xenopus tropicalis, 94.0); Aatf (Drosophila melanogaster, 72.4); Y73E7A.2 (Caenorhabditis elegans, 62.0); AT5G61330 (Arabidopsis thaliana, 73.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1011603-1013243:+ | gene-YDR299W_AKU4011 | rna-NM_001180607.3_AKU4011 | cds-NP_010585.3_AKU4011 | 97.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:118332-119963:- | gene-YDR299W_BG1 | rna-NM_001180607.3_BG1 | cds-NP_010585.3_BG1 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1038867-1040510:+ | gene-YDR299W_Bruggeman | rna-NM_001180607.3_Bruggeman | cds-NP_010585.3_Bruggeman | 97.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1025877-1027508:+ | gene-YDR299W_CAT1 | rna-NM_001180607.3_CAT1 | cds-NP_010585.3_CAT1 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1006048-1007688:+ | gene-YDR299W_CBS1585 | rna-NM_001180607.3_CBS1585 | cds-NP_010585.3_CBS1585 | 97.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1024404-1026059:+ | gene-YDR299W_CBS436 | rna-NM_001180607.3_CBS436 | cds-NP_010585.3_CBS436 | 96.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1002730-1004370:+ | gene-YDR299W_CBS6412 | rna-NM_001180607.3_CBS6412 | cds-NP_010585.3_CBS6412 | 97.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1023968-1025608:+ | gene-YDR299W_CBS6413 | rna-NM_001180607.3_CBS6413 | cds-NP_010585.3_CBS6413 | 97.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1058269-1059873:+ | gene-YDR299W_CENPK1137D | rna-NM_001180607.3_CENPK1137D | cds-NP_010585.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1010146-1011598:+ | gene-YDR299W_EthanolRed | rna-NM_001180607.3_EthanolRed | cds-NP_010585.3_EthanolRed | 90.0 | 90.5 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1018348-1020000:+ | gene-YDR299W_FaliES1 | rna-NM_001180607.3_FaliES1 | cds-NP_010585.3_FaliES1 | 96.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000130.1:36162-37793:+ | gene-YDR299W_JAY291 | rna-NM_001180607.3_JAY291 | cds-NP_010585.3_JAY291 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1024380-1025996:+ | gene-YDR299W_MUCL30387 | rna-NM_001180607.3_MUCL30387 | cds-NP_010585.3_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1011449-1013092:+ | gene-YDR299W_MUCL30388 | rna-NM_001180607.3_MUCL30388 | cds-NP_010585.3_MUCL30388 | 97.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:997854-999494:+ | gene-YDR299W_MUCL39482 | rna-NM_001180607.3_MUCL39482 | cds-NP_010585.3_MUCL39482 | 97.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:937830-939461:+ | gene-YDR299W_MUCL42920 | rna-NM_001180607.3_MUCL42920 | cds-NP_010585.3_MUCL42920 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1059550-1061154:+ | gene-YDR299W_NCIM3186 | rna-NM_001180607.3_NCIM3186 | cds-NP_010585.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1011147-1012787:+ | gene-YDR299W_NCYC1407 | rna-NM_001180607.3_NCYC1407 | cds-NP_010585.3_NCYC1407 | 97.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1022135-1023766:+ | gene-YDR299W_PE2H3 | rna-NM_001180607.3_PE2H3 | cds-NP_010585.3_PE2H3 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1027720-1029351:+ | gene-YDR299W_PE2H4 | rna-NM_001180607.3_PE2H4 | cds-NP_010585.3_PE2H4 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1059627-1061231:+ | gene-YDR299W_S288C | rna-NM_001180607.3_S288C | cds-NP_010585.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000025.1:36335-37966:+ | gene-YDR299W_SA1 | rna-NM_001180607.3_SA1 | cds-NP_010585.3_SA1 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1022633-1024273:+ | gene-YDR299W_ThermosaccDry | rna-NM_001180607.3_ThermosaccDry | cds-NP_010585.3_ThermosaccDry | 97.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1038554-1040185:+ | gene-YDR299W_VR1 | rna-NM_001180607.3_VR1 | cds-NP_010585.3_VR1 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:66761-68388:+ | gene-YDR299W_ZTW1 | rna-NM_001180607.3_ZTW1 | cds-NP_010585.3_ZTW1 | 98.1 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1018208-1019815:+ | gene-YDR299W_Sparadoxus | rna-NM_001180607.3_Sparadoxus | cds-NP_010585.3_Sparadoxus | 89.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |