Gene name: BET5
Reference locus (S288C): YML077W
Gene biotype: protein_coding
Description: Core component of transport protein particle (TRAPP) complexes I-III; TRAPP complexes are related multimeric guanine nucleotide-exchange factors for the GTPase Ypt1p, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII); human homology TRAPPC1 complements yeast null mutant; Belongs to the TRAPP small subunits family. BET5 subfamily
Top 10 interactors (score): TRS23 (0.999); TRS31 (0.999); TRS120 (0.999); TRS20 (0.999); YPT1 (0.999); TRS130 (0.999); TRS85 (0.999); TRS33 (0.999); BET3 (0.999); TCA17 (0.996); TRS65 (0.995); SEC23 (0.951); MRS6 (0.944); SEC22 (0.934); SEC31 (0.923); USO1 (0.917); SEC13 (0.902); COG3 (0.883); YPT31 (0.878); VPS53 (0.852)
Homologues (species, bitscore): TRAPPC1 (Homo sapiens, 78.2); Trappc1 (Mus musculus, 80.5); trappc1 (Danio rerio, 77.4); trappc1 (Xenopus tropicalis, 82.8); Bet5 (Drosophila melanogaster, 67.8); AT1G51160 (Arabidopsis thaliana, 57.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:105598-106077:+ | gene-YML077W_AKU4011 | rna-NM_001182436.1_AKU4011 | cds-NP_013634.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:370035-370514:- | gene-YML077W_BG1 | rna-NM_001182436.1_BG1 | cds-NP_013634.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:111767-112246:+ | gene-YML077W_Bruggeman | rna-NM_001182436.1_Bruggeman | cds-NP_013634.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:113441-113920:+ | gene-YML077W_CAT1 | rna-NM_001182436.1_CAT1 | cds-NP_013634.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:105607-106086:+ | gene-YML077W_CBS1585 | rna-NM_001182436.1_CBS1585 | cds-NP_013634.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:111535-112014:+ | gene-YML077W_CBS436 | rna-NM_001182436.1_CBS436 | cds-NP_013634.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:106315-106794:+ | gene-YML077W_CBS6412 | rna-NM_001182436.1_CBS6412 | cds-NP_013634.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:104790-105269:+ | gene-YML077W_CBS6413 | rna-NM_001182436.1_CBS6413 | cds-NP_013634.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:106585-107064:+ | gene-YML077W_CENPK1137D | rna-NM_001182436.1_CENPK1137D | cds-NP_013634.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:105873-106352:+ | gene-YML077W_EthanolRed | rna-NM_001182436.1_EthanolRed | cds-NP_013634.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:106380-106859:+ | gene-YML077W_FaliES1 | rna-NM_001182436.1_FaliES1 | cds-NP_013634.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000366.1:50225-50704:- | gene-YML077W_JAY291 | rna-NM_001182436.1_JAY291 | cds-NP_013634.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:110291-110770:+ | gene-YML077W_MUCL30387 | rna-NM_001182436.1_MUCL30387 | cds-NP_013634.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:113437-113916:+ | gene-YML077W_MUCL30388 | rna-NM_001182436.1_MUCL30388 | cds-NP_013634.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:105618-106097:+ | gene-YML077W_MUCL39482 | rna-NM_001182436.1_MUCL39482 | cds-NP_013634.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:110345-110824:+ | gene-YML077W_MUCL42920 | rna-NM_001182436.1_MUCL42920 | cds-NP_013634.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:111819-112298:+ | gene-YML077W_NCIM3186 | rna-NM_001182436.1_NCIM3186 | cds-NP_013634.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:106413-106892:+ | gene-YML077W_NCYC1407 | rna-NM_001182436.1_NCYC1407 | cds-NP_013634.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:111770-112249:+ | gene-YML077W_PE2H3 | rna-NM_001182436.1_PE2H3 | cds-NP_013634.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:111712-112191:+ | gene-YML077W_PE2H4 | rna-NM_001182436.1_PE2H4 | cds-NP_013634.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:111865-112344:+ | gene-YML077W_S288C | rna-NM_001182436.1_S288C | cds-NP_013634.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000041.1:71893-72372:- | gene-YML077W_SA1 | rna-NM_001182436.1_SA1 | cds-NP_013634.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:105672-106151:+ | gene-YML077W_ThermosaccDry | rna-NM_001182436.1_ThermosaccDry | cds-NP_013634.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:110060-110539:+ | gene-YML077W_VR1 | rna-NM_001182436.1_VR1 | cds-NP_013634.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:85207-85686:+ | gene-YML077W_ZTW1 | rna-NM_001182436.1_ZTW1 | cds-NP_013634.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:116392-116871:+ | gene-YML077W_Sparadoxus | rna-NM_001182436.1_Sparadoxus | cds-NP_013634.1_Sparadoxus | 92.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |