Gene name: BET4
Reference locus (S288C): YJL031C
Gene biotype: protein_coding
Description: Alpha subunit of Type II geranylgeranyltransferase; required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p
Top 10 interactors (score): BET2 (0.999); MRS6 (0.986); RAM1 (0.969); YPT1 (0.907); CDC43 (0.901); GLE2 (0.883); SEC4 (0.852); YPT7 (0.781); VPS21 (0.77); YPT52 (0.682); YPT53 (0.682); BET3 (0.681); YPT32 (0.679); YPT6 (0.678); YPT10 (0.675); YPT11 (0.67); YPT31 (0.67); APM3 (0.663); RAS2 (0.659); RAS1 (0.654)
Homologues (species, bitscore): RABGGTA (Homo sapiens, 145.2); Rabggta (Mus musculus, 148.3); rabggta (Danio rerio, 134.0); rabggta (Xenopus tropicalis, 142.5); CG12007 (Drosophila melanogaster, 116.7); M57.2 (Caenorhabditis elegans, 115.5); RGTA1 (Arabidopsis thaliana, 129.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:369325-370395:- | gene-YJL031C_AKU4011 | rna-NM_001181465.1_AKU4011 | cds-NP_012503.2_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:243684-244754:+ | gene-YJL031C_BG1 | rna-NM_001181465.1_BG1 | cds-NP_012503.2_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:383524-384594:- | gene-YJL031C_Bruggeman | rna-NM_001181465.1_Bruggeman | cds-NP_012503.2_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:387479-388549:- | gene-YJL031C_CAT1 | rna-NM_001181465.1_CAT1 | cds-NP_012503.2_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:380991-382061:- | gene-YJL031C_CBS1585 | rna-NM_001181465.1_CBS1585 | cds-NP_012503.2_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:399352-400422:- | gene-YJL031C_CBS436 | rna-NM_001181465.1_CBS436 | cds-NP_012503.2_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:369587-370657:- | gene-YJL031C_CBS6412 | rna-NM_001181465.1_CBS6412 | cds-NP_012503.2_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:371467-372537:- | gene-YJL031C_CBS6413 | rna-NM_001181465.1_CBS6413 | cds-NP_012503.2_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:368794-369864:- | gene-YJL031C_CENPK1137D | rna-NM_001181465.1_CENPK1137D | cds-NP_012503.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:372543-373613:- | gene-YJL031C_EthanolRed | rna-NM_001181465.1_EthanolRed | cds-NP_012503.2_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:384991-386061:- | gene-YJL031C_FaliES1 | rna-NM_001181465.1_FaliES1 | cds-NP_012503.2_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000200.1:29365-30435:+ | gene-YJL031C_JAY291 | rna-NM_001181465.1_JAY291 | cds-NP_012503.2_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:383765-384835:- | gene-YJL031C_MUCL30387 | rna-NM_001181465.1_MUCL30387 | cds-NP_012503.2_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:379909-380979:- | gene-YJL031C_MUCL30388 | rna-NM_001181465.1_MUCL30388 | cds-NP_012503.2_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:374315-375385:- | gene-YJL031C_MUCL39482 | rna-NM_001181465.1_MUCL39482 | cds-NP_012503.2_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:379653-380723:- | gene-YJL031C_MUCL42920 | rna-NM_001181465.1_MUCL42920 | cds-NP_012503.2_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:386347-387417:- | gene-YJL031C_NCIM3186 | rna-NM_001181465.1_NCIM3186 | cds-NP_012503.2_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:372262-373332:- | gene-YJL031C_NCYC1407 | rna-NM_001181465.1_NCYC1407 | cds-NP_012503.2_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:384342-385412:- | gene-YJL031C_PE2H3 | rna-NM_001181465.1_PE2H3 | cds-NP_012503.2_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:383988-385058:- | gene-YJL031C_PE2H4 | rna-NM_001181465.1_PE2H4 | cds-NP_012503.2_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:386368-387438:- | gene-YJL031C_S288C | rna-NM_001181465.1_S288C | cds-NP_012503.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:181872-182942:- | gene-YJL031C_SA1 | rna-NM_001181465.1_SA1 | cds-NP_012503.2_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:378652-379722:- | gene-YJL031C_ThermosaccDry | rna-NM_001181465.1_ThermosaccDry | cds-NP_012503.2_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:380498-381568:- | gene-YJL031C_VR1 | rna-NM_001181465.1_VR1 | cds-NP_012503.2_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:359316-360386:- | gene-YJL031C_ZTW1 | rna-NM_001181465.1_ZTW1 | cds-NP_012503.2_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:384562-385633:- | gene-YJL031C_Sparadoxus | rna-NM_001181465.1_Sparadoxus | cds-NP_012503.2_Sparadoxus | 89.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |