Gene name: BET3
Reference locus (S288C): YKR068C
Gene biotype: protein_coding
Description: Core component of transport protein particle (TRAPP) complexes I-III; TRAPP complexes are related multimeric guanine nucleotide-exchange factors for the GTPase Ypt1, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII); hydrophilic homodimeric protein that acts in conjunction with SNARE proteins in targeting and fusion of ER to Golgi transport vesicles
Top 10 interactors (score): TRS130 (0.999); TRS85 (0.999); TRS33 (0.999); TRS65 (0.999); YPT1 (0.999); BET5 (0.999); TRS23 (0.999); TRS31 (0.999); TRS120 (0.999); TRS20 (0.999); SEC23 (0.998); TCA17 (0.997); SEC31 (0.981); SEC22 (0.974); SEC13 (0.969); SED5 (0.956); SEC24 (0.952); COG3 (0.947); GDI1 (0.947); MRS6 (0.937)
Homologues (species, bitscore): TRAPPC3 (Homo sapiens, 194.9); Trappc3 (Mus musculus, 204.5); trappc3 (Danio rerio, 206.5); trappc3 (Xenopus tropicalis, 207.2); Bet3 (Drosophila melanogaster, 184.9); ZK1098.5 (Caenorhabditis elegans, 122.9); AT5G54750 (Arabidopsis thaliana, 159.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:556373-556954:- | gene-YKR068C_AKU4011 | rna-NM_001179858.1_AKU4011 | cds-NP_012994.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:87322-87903:+ | gene-YKR068C_BG1 | rna-NM_001179858.1_BG1 | cds-NP_012994.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:577805-578386:- | gene-YKR068C_Bruggeman | rna-NM_001179858.1_Bruggeman | cds-NP_012994.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:574219-574800:- | gene-YKR068C_CAT1 | rna-NM_001179858.1_CAT1 | cds-NP_012994.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:568864-569445:- | gene-YKR068C_CBS1585 | rna-NM_001179858.1_CBS1585 | cds-NP_012994.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:567188-567769:- | gene-YKR068C_CBS436 | rna-NM_001179858.1_CBS436 | cds-NP_012994.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:552154-552735:- | gene-YKR068C_CBS6412 | rna-NM_001179858.1_CBS6412 | cds-NP_012994.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:568684-569265:- | gene-YKR068C_CBS6413 | rna-NM_001179858.1_CBS6413 | cds-NP_012994.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:569982-570563:- | gene-YKR068C_CENPK1137D | rna-NM_001179858.1_CENPK1137D | cds-NP_012994.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:565682-566263:- | gene-YKR068C_EthanolRed | rna-NM_001179858.1_EthanolRed | cds-NP_012994.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:569582-570163:- | gene-YKR068C_FaliES1 | rna-NM_001179858.1_FaliES1 | cds-NP_012994.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000410.1:8075-8656:+ | gene-YKR068C_JAY291 | rna-NM_001179858.1_JAY291 | cds-NP_012994.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:578197-578778:- | gene-YKR068C_MUCL30387 | rna-NM_001179858.1_MUCL30387 | cds-NP_012994.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:572796-573377:- | gene-YKR068C_MUCL30388 | rna-NM_001179858.1_MUCL30388 | cds-NP_012994.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:567693-568274:- | gene-YKR068C_MUCL39482 | rna-NM_001179858.1_MUCL39482 | cds-NP_012994.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:573712-574293:- | gene-YKR068C_MUCL42920 | rna-NM_001179858.1_MUCL42920 | cds-NP_012994.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:570317-570898:- | gene-YKR068C_NCIM3186 | rna-NM_001179858.1_NCIM3186 | cds-NP_012994.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:568116-568697:- | gene-YKR068C_NCYC1407 | rna-NM_001179858.1_NCYC1407 | cds-NP_012994.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:593270-593851:- | gene-YKR068C_PE2H3 | rna-NM_001179858.1_PE2H3 | cds-NP_012994.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:577657-578238:- | gene-YKR068C_PE2H4 | rna-NM_001179858.1_PE2H4 | cds-NP_012994.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:570328-570909:- | gene-YKR068C_S288C | rna-NM_001179858.1_S288C | cds-NP_012994.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000029.1:110935-111516:+ | gene-YKR068C_SA1 | rna-NM_001179858.1_SA1 | cds-NP_012994.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:568821-569402:- | gene-YKR068C_ThermosaccDry | rna-NM_001179858.1_ThermosaccDry | cds-NP_012994.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:568582-569163:- | gene-YKR068C_VR1 | rna-NM_001179858.1_VR1 | cds-NP_012994.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:566309-566890:- | gene-YKR068C_ZTW1 | rna-NM_001179858.1_ZTW1 | cds-NP_012994.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:591674-592255:- | gene-YKR068C_Sparadoxus | rna-NM_001179858.1_Sparadoxus | cds-NP_012994.1_Sparadoxus | 92.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |