Gene name: BET2
Reference locus (S288C): YPR176C
Gene biotype: protein_coding
Description: Beta subunit of Type II geranylgeranyltransferase; required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p; human homolog RABGGTB can complement yeast BET2 mutant
Top 10 interactors (score): BET4 (0.999); MRS6 (0.995); YPT1 (0.982); SEC4 (0.977); RAM2 (0.974); YPT7 (0.912); PRS1 (0.896); ELC1 (0.875); YPT6 (0.873); ARF1 (0.807); VPS21 (0.8); YPT32 (0.795); YPK9 (0.772); YPT11 (0.764); YKT6 (0.755); GDI1 (0.74); YPT31 (0.74); YPT53 (0.725); YPT52 (0.725); YPT10 (0.718)
Homologues (species, bitscore): RABGGTB (Homo sapiens, 348.2); Rabggtb (Mus musculus, 344.7); rabggtb (Danio rerio, 342.0); rabggtb (Xenopus tropicalis, 352.4); betaggt-II (Drosophila melanogaster, 327.0); ggtb-1 (Caenorhabditis elegans, 302.4); RGTB1 (Arabidopsis thaliana, 325.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:845380-846357:- | gene-YPR176C_AKU4011 | rna-NM_001184273.1_AKU4011 | cds-NP_015502.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:51353-52330:+ | gene-YPR176C_BG1 | rna-NM_001184273.1_BG1 | cds-NP_015502.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:926664-927641:- | gene-YPR176C_Bruggeman | rna-NM_001184273.1_Bruggeman | cds-NP_015502.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:968720-969697:- | gene-YPR176C_CAT1 | rna-NM_001184273.1_CAT1 | cds-NP_015502.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:850182-851159:- | gene-YPR176C_CBS1585 | rna-NM_001184273.1_CBS1585 | cds-NP_015502.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:863728-864705:- | gene-YPR176C_CBS436 | rna-NM_001184273.1_CBS436 | cds-NP_015502.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:851966-852943:- | gene-YPR176C_CBS6412 | rna-NM_001184273.1_CBS6412 | cds-NP_015502.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:847110-848087:- | gene-YPR176C_CBS6413 | rna-NM_001184273.1_CBS6413 | cds-NP_015502.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:891186-892163:- | gene-YPR176C_CENPK1137D | rna-NM_001184273.1_CENPK1137D | cds-NP_015502.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1167142-1168119:- | gene-YPR176C_EthanolRed | rna-NM_001184273.1_EthanolRed | cds-NP_015502.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:847215-848192:- | gene-YPR176C_FaliES1 | rna-NM_001184273.1_FaliES1 | cds-NP_015502.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000081.1:34506-35483:- | gene-YPR176C_JAY291 | rna-NM_001184273.1_JAY291 | cds-NP_015502.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:893910-894887:- | gene-YPR176C_MUCL30387 | rna-NM_001184273.1_MUCL30387 | cds-NP_015502.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:868039-869016:- | gene-YPR176C_MUCL30388 | rna-NM_001184273.1_MUCL30388 | cds-NP_015502.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:842382-843359:- | gene-YPR176C_MUCL39482 | rna-NM_001184273.1_MUCL39482 | cds-NP_015502.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:906852-907829:- | gene-YPR176C_MUCL42920 | rna-NM_001184273.1_MUCL42920 | cds-NP_015502.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:891084-892061:- | gene-YPR176C_NCIM3186 | rna-NM_001184273.1_NCIM3186 | cds-NP_015502.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:850743-851720:- | gene-YPR176C_NCYC1407 | rna-NM_001184273.1_NCYC1407 | cds-NP_015502.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:863030-864007:- | gene-YPR176C_PE2H3 | rna-NM_001184273.1_PE2H3 | cds-NP_015502.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:862678-863655:- | gene-YPR176C_PE2H4 | rna-NM_001184273.1_PE2H4 | cds-NP_015502.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:891101-892078:- | gene-YPR176C_S288C | rna-NM_001184273.1_S288C | cds-NP_015502.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000060.1:33734-34711:+ | gene-YPR176C_SA1 | rna-NM_001184273.1_SA1 | cds-NP_015502.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:846903-847880:- | gene-YPR176C_ThermosaccDry | rna-NM_001184273.1_ThermosaccDry | cds-NP_015502.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:874685-875662:- | gene-YPR176C_VR1 | rna-NM_001184273.1_VR1 | cds-NP_015502.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:849452-850429:- | gene-YPR176C_ZTW1 | rna-NM_001184273.1_ZTW1 | cds-NP_015502.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:851532-852509:- | gene-YPR176C_Sparadoxus | rna-NM_001184273.1_Sparadoxus | cds-NP_015502.1_Sparadoxus | 90.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |